Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytoskeleton, vacuole, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • cytosol 1
  • cytoskeleton 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:cytoskeleton, cytosol, vacuole
Any Predictor:cytoskeleton, cytosol, nucleus, vacuole
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:vacuole
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY08036 Canola cytosol, nucleus, vacuole 95.0 95.76
Bra001215.1-P Field mustard extracellular 97.89 82.85
AT3G06770.5 Thale cress extracellular 83.68 71.14
CDY33922 Canola extracellular 73.16 62.61
CDY56436 Canola extracellular, vacuole 73.95 59.28
CDY05643 Canola extracellular, plasma membrane, plastid 73.16 58.16
CDX86247 Canola plasma membrane, plastid 73.42 55.69
VIT_05s0077g01760.t01 Wine grape extracellular, vacuole 62.89 52.53
KRH37050 Soybean extracellular, vacuole 61.84 51.99
VIT_05s0077g01740.t01 Wine grape nucleus 31.84 51.27
KRH02302 Soybean extracellular 60.26 51.0
KRH50791 Soybean extracellular 60.26 51.0
CDY54633 Canola extracellular 60.0 50.89
CDX92101 Canola extracellular, golgi 60.79 50.77
CDX95899 Canola extracellular 60.0 50.33
CDX82390 Canola extracellular 59.21 50.11
KRH12027 Soybean extracellular, vacuole 61.58 49.68
GSMUA_Achr5P00100_001 Banana cytosol, extracellular, plastid 54.21 48.82
Os12t0554800-01 Rice cytosol, extracellular 53.42 47.88
PGSC0003DMT400081328 Potato extracellular 56.84 47.06
TraesCS5B01G097100.2 Wheat extracellular 54.74 46.33
Os11t0658800-01 Rice extracellular 54.47 46.1
GSMUA_Achr11P... Banana extracellular, vacuole 53.95 46.07
PGSC0003DMT400018848 Potato extracellular 55.26 45.95
TraesCS5D01G102900.1 Wheat unclear 53.95 45.66
Solyc06g009790.2.1 Tomato extracellular 54.47 45.3
Solyc09g075460.2.1 Tomato extracellular 56.84 45.0
Zm00001d023813_P001 Maize extracellular, vacuole 54.47 44.9
TraesCS4D01G146700.1 Wheat extracellular, golgi, vacuole 53.95 44.86
KXG29050 Sorghum extracellular 53.16 44.79
TraesCS4A01G168800.1 Wheat extracellular, golgi, vacuole 53.68 44.64
TraesCS4B01G144700.2 Wheat extracellular, golgi, vacuole 53.42 44.42
TraesCS5A01G090800.2 Wheat extracellular, golgi, mitochondrion, plastid 54.21 43.46
HORVU5Hr1G023800.7 Barley plastid 56.05 41.52
Zm00001d048696_P001 Maize extracellular 52.63 40.49
CDY69951 Canola cytosol 13.42 40.48
CDX94222 Canola extracellular 45.79 38.58
CDY10970 Canola extracellular, vacuole 45.79 38.58
CDX67875 Canola extracellular, golgi 46.32 38.43
CDY25090 Canola extracellular, golgi 46.32 38.43
CDY03516 Canola extracellular, vacuole 44.74 38.29
CDY47619 Canola extracellular, vacuole 44.47 38.06
CDX67513 Canola extracellular 44.74 38.03
CDY13383 Canola extracellular 44.47 37.98
CDY70893 Canola cytosol 35.26 37.43
CDY11403 Canola extracellular, plasma membrane 45.0 37.17
CDX76617 Canola extracellular, plasma membrane 44.74 36.96
GSMUA_Achr11P... Banana extracellular 52.89 36.61
CDY69255 Canola cytosol 35.53 35.9
CDY44105 Canola cytosol, nucleus, plasma membrane 42.63 35.84
CDX68976 Canola extracellular 43.95 35.46
CDX75352 Canola extracellular 43.95 35.38
CDX71719 Canola mitochondrion 15.26 35.37
CDY10898 Canola cytosol 4.74 35.29
CDY10897 Canola cytosol, extracellular, peroxisome 21.84 34.73
CDY46115 Canola extracellular 42.89 34.46
CDX72404 Canola extracellular 42.89 34.46
CDY05907 Canola cytosol 37.89 32.88
CDY05885 Canola extracellular 40.0 32.76
CDY53228 Canola extracellular 9.47 32.14
CDY48913 Canola extracellular 39.47 31.85
CDY65355 Canola extracellular 39.47 31.78
CDY08113 Canola extracellular 37.37 31.14
CDY08095 Canola extracellular, plasma membrane 40.26 30.91
GSMUA_Achr11P... Banana cytosol 52.63 30.21
CDY39678 Canola extracellular 37.37 29.71
CDY20264 Canola extracellular 37.11 29.5
CDX83782 Canola extracellular, golgi, plastid 38.95 29.19
CDX96676 Canola extracellular, golgi, plastid 38.68 28.99
CDY27797 Canola extracellular, mitochondrion, plastid 37.89 28.74
CDY41934 Canola extracellular, mitochondrion, plastid 37.89 28.69
CDY10899 Canola cytosol 4.74 18.75
CDY12962 Canola extracellular, plasma membrane, vacuole 21.58 17.15
CDY11375 Canola mitochondrion 22.63 16.96
CDY02392 Canola extracellular, plasma membrane, vacuole 21.32 16.95
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078CBD2EnsemblPlants:CDX74085ProteinID:CDX74085ProteinID:CDX74085.1
GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00111836001InterPro:Glyco_hydro_28InterPro:IPR012334PFAM:PF00295PANTHER:PTHR31339
PANTHER:PTHR31339:SF15InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSUPFAM:SSF51126UniParc:UPI0004EDFA08SEG:seg
Description
BnaA03g29620D
Coordinates
chrLK031800:+:1225097..1227275
Molecular Weight (calculated)
40886.1 Da
IEP (calculated)
6.386
GRAVY (calculated)
-0.043
Length
380 amino acids
Sequence
(BLAST)
001: MSFADKGGAQ LYVPPGKWLT GSFSLTSHLT LFLENGAVIV ASQDPSHWGV VEPLPSYGRG IDLPGKRYKS LISGHMLHDV IITGDNGTID GQGLVWWDRF
101: ASHSLKYNRP HLVEFISSED ITISNVTFLN APCYTVHAIY SSHVYIHKIL AHSSPGSPYT IGIVPDSSDN VCIQNSTINM GYDAISLKSG WDEYGISYSR
201: PTENVHIRNV NLQAASGSSI SFGSEMSGGI SHVVVDNAFI HNSLTGIAFR TTKGRGGYIR EIDVSNIDMW RIGTAIVANG SFGSHPDDKF DANALPIVSG
301: IRLSNASGVD IGVAGDLFGI KESPFRSVAL YNVSLLMSSG SSSSDGSWSC SYVYGSSKLV TPEPCPELMR VDNGYGRATF
Best Arabidopsis Sequence Match ( AT3G06770.1 )
(BLAST)
001: MSFADKGGAQ LYVPPGHWLT GSFSLTSHLT LFLENGAVIV ASQDPSHWEV VDPLPSYGRG IDLPGKRYKS LINGNKLHDV VVTGDNGTID GQGLVWWDRF
101: TSHSLKYNRP HLIEFLSSEN VIVSNLTFLN APAYSIYSIY SSHVYIHKIL AHSSPKSPYT IGIVPDSSDY VCIQNSTINV GYDAISLKSG WDEYGIAYSR
201: PTENVHIRNV YLRGASGSSI SFGSEMSGGI SDVVVDNAHI HYSLTGIAFR TTKGRGGYIK EIDISNIDML RIGTAIVANG SFGSHPDDKY DVNALPLVSH
301: IRLSNISGEN IGIAGKLFGI KESPFSSVTL SNVSLSMSSG SSVSWQCSYV YGSSESVIPE PCPELKRDAD AYGRAAV
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN94]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.