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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY08113 Canola extracellular 98.4 94.52
CDY10898 Canola cytosol 8.22 70.59
CDY20264 Canola extracellular 74.43 68.2
CDY39678 Canola extracellular 74.43 68.2
CDY05885 Canola extracellular 71.92 67.89
CDY08095 Canola extracellular, plasma membrane 73.29 64.85
CDY69951 Canola cytosol 18.49 64.29
KRG91587 Soybean cytosol, extracellular, plastid 35.62 63.93
KRH35240 Soybean extracellular 65.98 61.36
KRH35239 Soybean extracellular, plasma membrane, plastid 66.44 60.62
CDY70893 Canola cytosol 49.54 60.61
KRH35238 Soybean extracellular 63.7 59.87
CDY69255 Canola cytosol 50.23 58.51
KRH38380 Soybean extracellular 62.79 57.77
KRH08861 Soybean extracellular 62.33 57.23
CDY44105 Canola cytosol, nucleus, plasma membrane 56.16 54.42
Solyc03g007950.2.1 Tomato extracellular 57.53 53.96
CDY65355 Canola extracellular 57.53 53.39
CDY10899 Canola cytosol 11.64 53.12
VIT_16s0050g01120.t01 Wine grape cytosol 22.6 52.94
CDY48913 Canola extracellular 56.62 52.65
PGSC0003DMT400024595 Potato cytosol 57.31 52.62
CDY53228 Canola extracellular 10.96 42.86
CDX94222 Canola extracellular 43.61 42.35
CDY03516 Canola extracellular, vacuole 42.92 42.34
CDY47619 Canola extracellular, vacuole 42.92 42.34
CDY10970 Canola extracellular, vacuole 43.38 42.13
CDY11403 Canola extracellular, plasma membrane 42.92 40.87
CDY13383 Canola extracellular 41.1 40.45
CDX67513 Canola extracellular 41.1 40.27
CDX67875 Canola extracellular, golgi 42.01 40.17
CDY46115 Canola extracellular 43.38 40.17
CDY25090 Canola extracellular, golgi 41.78 39.96
CDX76617 Canola extracellular, plasma membrane 41.78 39.78
CDX82390 Canola extracellular 40.64 39.64
CDX75352 Canola extracellular 42.69 39.62
CDX72404 Canola extracellular 42.69 39.53
CDY54633 Canola extracellular 40.41 39.51
CDX68976 Canola extracellular 42.47 39.49
CDX92101 Canola extracellular, golgi 40.87 39.34
CDX95899 Canola extracellular 40.41 39.07
CDY33922 Canola extracellular 39.04 38.51
CDY08036 Canola cytosol, nucleus, vacuole 32.88 38.2
CDX74085 Canola cytoskeleton, cytosol, vacuole 32.88 37.89
CDY56436 Canola extracellular, vacuole 39.27 36.29
CDY27797 Canola extracellular, mitochondrion, plastid 41.32 36.13
CDY05643 Canola extracellular, plasma membrane, plastid 39.27 35.98
CDY41934 Canola extracellular, mitochondrion, plastid 41.1 35.86
CDY10897 Canola cytosol, extracellular, peroxisome 19.41 35.56
CDX83782 Canola extracellular, golgi, plastid 40.64 35.11
CDX96676 Canola extracellular, golgi, plastid 40.41 34.91
CDX86247 Canola plasma membrane, plastid 39.5 34.53
CDX71719 Canola mitochondrion 11.87 31.71
VIT_16s0050g01110.t01 Wine grape extracellular, golgi 63.24 26.36
CDY12962 Canola extracellular, plasma membrane, vacuole 22.83 20.92
CDY02392 Canola extracellular, plasma membrane, vacuole 22.6 20.71
CDY11375 Canola mitochondrion 20.09 17.36
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078EY27EnsemblPlants:CDY05907ProteinID:CDY05907ProteinID:CDY05907.1
GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0071555EnsemblPlantsGene:GSBRNA2T00121709001InterPro:Glyco_hydro_28
InterPro:IPR012334PFAM:PF00295PANTHER:PTHR31339PANTHER:PTHR31339:SF17InterPro:PbH1InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulenceSMART:SM00710SUPFAM:SSF51126UniParc:UPI0004EE4ADB::
Description
BnaC08g20840D
Coordinates
chrLK031966:-:440964..443014
Molecular Weight (calculated)
47850.8 Da
IEP (calculated)
8.329
GRAVY (calculated)
-0.113
Length
438 amino acids
Sequence
(BLAST)
001: MMESRVESKK GIEYMAMQCR KHKAVLTDFG AVGDGKTSNT KAFRDAIAKL TPQAADGGVQ LIVPPGNWLT GSFNLTSHFT LFIQQGATIL ASQVESEYPM
101: IPRLPSYGDA RFASLIYGTN LTDVVITGNK GTINGQGKSW WLKYRSGGFN LISRPLLIEI LYSENIQISD INLVDSPMWN IHPVYCKNVI IKNIKIDAPI
201: DSPNTDGINP DSCTNTLIED CSVTSGDDCI AVKSGIDQYG IATSIPTQQL SIRRLTCVSP DSAGIAIGSE MSGGIKDVRI EDVTLINTQS AIRIKTAIGR
301: GGYVKDIFAR RFTMKNMKYV FWITGSYKLH PIGFDPNALP EIRNINYRDM TADNVTISAK LEGIKKDPFT GICMSNVTMA LSPTTKKLQW NCTDVAGVTS
401: RVKPEPCSLL PSKGPAMDCH FPTDKIPIES VVLNKCTA
Best Arabidopsis Sequence Match ( AT2G23900.1 )
(BLAST)
001: MEFSINPSTL KMIRTSFCIL VVLAISSFSM MEARDLASKG KTNIEYMALN CRKHTAVLTE FGAVGDGKTS NTKAFKEAIT KLAPKAADGG VQLIVPPGKW
101: LTGSFNLTSH FTLFIQKGAT ILASQDESEY PVVAPLPSYG QGRDAAGPTF ASLISGTNLT DVVITGNNGT INGQGKYWWV KYRSGGFKGI TRPYTIEIIF
201: SQNVQISNIT IIDSPAWNIH PVYCNNVIVK GVTILAPIDS PNTDGINPDS CTNTLIEDCY VVSGDDCIAV KSGWDQFGIK VGMPTQQLSI RRLTCISPDS
301: AGIALGSEMS GGIKDVRIED ITLLQTQSAI RIKTAVGRGG YVKDIFARRF TMKTMKYVFW MSGAYNQHPA SGFDPKAMPV ITNINYRDMT ADNVTQPARL
401: DGFKNDPFTK ICMSNIKIDL AAEPKKLLWN CTSISGVSSK VTPKPCSLLP EKGAPVDCAF PVDKIPIESV VLNKCSA
Arabidopsis Description
Glycoside hydrolase family 28 protein/polygalacturonase family protein [Source:UniProtKB/TrEMBL;Acc:Q1PF10]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.