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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: vacuole, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • cytosol 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, vacuole
Any Predictor:cytosol, nucleus, vacuole
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:vacuole
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX74085 Canola cytoskeleton, cytosol, vacuole 95.76 95.0
AT3G06770.5 Thale cress extracellular 83.82 70.69
CDY33922 Canola extracellular 73.47 62.39
CDY56436 Canola extracellular, vacuole 73.47 58.44
CDY05643 Canola extracellular, plasma membrane, plastid 72.94 57.53
CDX86247 Canola plasma membrane, plastid 73.21 55.09
VIT_05s0077g01760.t01 Wine grape extracellular, vacuole 64.19 53.19
KRH37050 Soybean extracellular, vacuole 62.86 52.43
VIT_05s0077g01740.t01 Wine grape nucleus 32.63 52.12
KRH02302 Soybean extracellular 61.27 51.45
KRH50791 Soybean extracellular 61.27 51.45
CDY54633 Canola extracellular 59.68 50.22
CDX95899 Canola extracellular 60.21 50.11
CDX92101 Canola extracellular, golgi 60.48 50.11
KRH12027 Soybean extracellular, vacuole 62.6 50.11
CDX82390 Canola extracellular 59.15 49.67
GSMUA_Achr5P00100_001 Banana cytosol, extracellular, plastid 54.38 48.58
Os12t0554800-01 Rice cytosol, extracellular 53.32 47.41
PGSC0003DMT400081328 Potato extracellular 57.56 47.28
PGSC0003DMT400018848 Potato extracellular 56.23 46.39
GSMUA_Achr11P... Banana extracellular, vacuole 54.64 46.29
Os11t0658800-01 Rice extracellular 54.64 45.88
Solyc06g009790.2.1 Tomato extracellular 55.44 45.73
TraesCS5B01G097100.2 Wheat extracellular 54.38 45.66
Solyc09g075460.2.1 Tomato extracellular 57.56 45.21
TraesCS4A01G168800.1 Wheat extracellular, golgi, vacuole 54.64 45.08
TraesCS4D01G146700.1 Wheat extracellular, golgi, vacuole 54.64 45.08
TraesCS5D01G102900.1 Wheat unclear 53.32 44.77
TraesCS4B01G144700.2 Wheat extracellular, golgi, vacuole 54.11 44.64
KXG29050 Sorghum extracellular 53.32 44.57
Zm00001d023813_P001 Maize extracellular, vacuole 54.11 44.25
TraesCS5A01G090800.2 Wheat extracellular, golgi, mitochondrion, plastid 53.85 42.83
HORVU5Hr1G023800.7 Barley plastid 55.44 40.74
CDY69951 Canola cytosol 13.53 40.48
Zm00001d048696_P001 Maize extracellular 52.79 40.28
CDX94222 Canola extracellular 46.42 38.8
CDY10970 Canola extracellular, vacuole 46.42 38.8
CDY13383 Canola extracellular 45.62 38.65
CDY03516 Canola extracellular, vacuole 45.36 38.51
CDX67513 Canola extracellular 45.62 38.48
CDY47619 Canola extracellular, vacuole 45.09 38.29
CDY25090 Canola extracellular, golgi 46.15 37.99
CDX67875 Canola extracellular, golgi 45.89 37.77
CDY70893 Canola cytosol 35.81 37.71
CDY10898 Canola cytosol 5.04 37.25
GSMUA_Achr11P... Banana extracellular 53.85 36.98
CDY11403 Canola extracellular, plasma membrane 44.83 36.74
CDX76617 Canola extracellular, plasma membrane 44.56 36.52
CDY69255 Canola cytosol 36.07 36.17
CDY44105 Canola cytosol, nucleus, plasma membrane 43.24 36.06
CDX68976 Canola extracellular 44.03 35.24
CDX75352 Canola extracellular 44.03 35.17
CDX71719 Canola mitochondrion 15.12 34.76
CDY10897 Canola cytosol, extracellular, peroxisome 21.75 34.31
CDX72404 Canola extracellular 42.97 34.25
CDY46115 Canola extracellular 42.97 34.25
CDY05885 Canola extracellular 40.58 32.97
CDY05907 Canola cytosol 38.2 32.88
CDY53228 Canola extracellular 9.55 32.14
CDY48913 Canola extracellular 39.79 31.85
CDY65355 Canola extracellular 39.79 31.78
CDY08095 Canola extracellular, plasma membrane 41.11 31.31
CDY08113 Canola extracellular 37.67 31.14
GSMUA_Achr11P... Banana cytosol 52.79 30.06
CDY39678 Canola extracellular 37.93 29.92
CDY20264 Canola extracellular 37.67 29.71
CDX83782 Canola extracellular, golgi, plastid 39.52 29.39
CDX96676 Canola extracellular, golgi, plastid 39.26 29.19
CDY27797 Canola extracellular, mitochondrion, plastid 37.93 28.54
CDY41934 Canola extracellular, mitochondrion, plastid 37.93 28.49
CDY10899 Canola cytosol 4.77 18.75
CDY11375 Canola mitochondrion 23.08 17.16
CDY12962 Canola extracellular, plasma membrane, vacuole 21.49 16.95
CDY02392 Canola extracellular, plasma membrane, vacuole 21.22 16.74
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078F3Y3UniProt:A0A078F3Y3EnsemblPlants:CDY08036ProteinID:CDY08036
ProteinID:CDY08036.1GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150
GO:GO:0008152GO:GO:0016787GO:GO:0016798EnsemblPlantsGene:GSBRNA2T00125285001InterPro:Glyco_hydro_28InterPro:IPR012334
PFAM:PF00295PANTHER:PTHR31339PANTHER:PTHR31339:SF15InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSUPFAM:SSF51126
UniParc:UPI0004EE25DESEG:seg::::
Description
BnaC03g34870DBnaC03g34870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F3Y3]
Coordinates
chrLK031982:+:735529..737670
Molecular Weight (calculated)
40633.8 Da
IEP (calculated)
6.264
GRAVY (calculated)
-0.038
Length
377 amino acids
Sequence
(BLAST)
001: MSFADKGGAQ LYVPPGKWLT GSFSLTSHLT LFLENGAVIV ASQDPSHWGV VEPLPSYGRG IDLPGKRYKS LISGHMLHDV IITGDNGTID GQGLVWWDRF
101: TSHSLKYNRP HLVEFISSQD ITISNVTFLN APCYTVHAIY SSHVYIHKIL AHSSPGSPYT IGIVPDSSDN VCIQNSTINM GYDAISLKSG WDEYGISYSR
201: PTENVHIRNV NLQAASGSSI SFGSEMSGGI SHVVVDNAFI HNSLTGIAFR TTKGRGGYIK EIDVSNIEMS RIGTAIVANG SFGSHPDDKF DANALPIVSG
301: IRLSNVSGID IGVAGELFGI KESPFRSVAL YNVSLSMNSG SSGDVSWSCS YVYGSSKLVT PEPCPELVRV DNGYDLW
Best Arabidopsis Sequence Match ( AT3G06770.5 )
(BLAST)
001: MSQVVTILIL ALTSVIPIYA NVHGAGKICD ELGRRSLSTR PHSVSITDFG AVGDGKTLNT LAFQNAVFYL MSFADKGGAQ LYVPPGHWLT GSFSLTSHLT
101: LFLENGAVIV ASQDPSHWEV VDPLPSYGRG IDLPGKRYKS LINGNKLHDV VVTGDNGTID GQGLVWWDRF TSHSLKYNRP HLIEFLSSEN VIVSNLTFLN
201: APAYSIYSIY SSHVYIHKIL AHSSPKSPYT IGIVPDSSDY VCIQNSTINV GYDAISLKSG WDEYGIAYSR PTENVHIRNV YLRGASGSSI SFGSEMSGGI
301: SDVVVDNAHI HYSLTGIAFR TTKGRGGYIK EIDISNIDML RIGTAIVANG SFGSHPDDKY DVNALPLVSH IRLSNISGEN IGIAGKLFGI KESPFSSVTL
401: SNVSLSMSSG SSVSWQCSYV YGSSESVIPE PCPELKRDAD AYGRAAV
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LN94]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.