Factsheet for Solyc06g009790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

extracellular: 22364583

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018848	Potato	extracellular	96.28	96.28
Solyc09g075460.2.1	Tomato	extracellular	77.46	73.75
VIT_07s0005g00890.t01	Wine grape	extracellular	67.83	64.99
KRH69264	Soybean	extracellular	60.18	60.44
KRH31843	Soybean	extracellular	59.52	59.65
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	54.7	59.24
KRG96478	Soybean	endoplasmic reticulum, extracellular	61.93	58.71
AT3G16850.1	Thale cress	vacuole	57.99	58.24
Bra037429.1-P	Field mustard	extracellular	56.24	57.88
CDY33922	Canola	extracellular	56.24	57.88
Os12t0554800-01	Rice	cytosol, extracellular	53.61	57.78
CDX92101	Canola	extracellular, golgi	57.33	57.58
CDX82390	Canola	extracellular	56.46	57.46
Bra001642.1-P	Field mustard	vacuole	56.67	57.43
Bra022182.1-P	Field mustard	extracellular, golgi	56.89	57.4
CDY54633	Canola	extracellular	56.02	57.14
AT5G49215.1	Thale cress	extracellular, vacuole	55.8	56.79
TraesCS5B01G097100.2	Wheat	extracellular	55.8	56.79
KRH68221	Soybean	extracellular	61.49	56.54
TraesCS5D01G102900.1	Wheat	unclear	55.36	56.35
CDX95899	Canola	extracellular	55.8	56.29
CDY08036	Canola	cytosol, nucleus, vacuole	45.73	55.44
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	55.36	55.36
AT3G06770.5	Thale cress	extracellular	54.05	55.26
Os11t0658800-01	Rice	extracellular	54.05	55.01
CDY56436	Canola	extracellular, vacuole	56.89	54.85
Bra020656.1-P	Field mustard	extracellular, plasma membrane	56.24	54.68
KXG29050	Sorghum	extracellular	53.83	54.55
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	54.49	54.49
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	54.49	54.49
CDX74085	Canola	cytoskeleton, cytosol, vacuole	45.3	54.47
Bra001215.1-P	Field mustard	extracellular	52.95	53.9
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	55.8	53.8
CDY05643	Canola	extracellular, plasma membrane, plastid	55.8	53.35
Zm00001d023813_P001	Maize	extracellular, vacuole	53.61	53.15
CDX86247	Canola	plasma membrane, plastid	56.46	51.5
GSMUA_Achr11P...	Banana	extracellular, vacuole	49.02	50.34
HORVU5Hr1G023800.7	Barley	plastid	56.46	50.29
Zm00001d048696_P001	Maize	extracellular	53.39	49.39
Solyc01g094970.2.1	Tomato	extracellular	42.01	47.17
Solyc08g082170.2.1	Tomato	nucleus	46.83	45.82
GSMUA_Achr11P...	Banana	extracellular	53.83	44.81
Solyc08g081480.2.1	Tomato	extracellular	44.42	42.03
Solyc05g049980.2.1	Tomato	extracellular	43.98	41.36
Solyc06g060170.2.1	Tomato	cytosol, golgi, plasma membrane	43.11	40.37
Solyc03g007950.2.1	Tomato	extracellular	40.92	40.04
Solyc03g117750.2.1	Tomato	extracellular, golgi	39.82	37.37
GSMUA_Achr11P...	Banana	cytosol	53.39	36.86
Solyc07g042160.2.1	Tomato	nucleus	39.82	36.84
Solyc12g009210.1.1	Tomato	nucleus	38.07	35.15
Solyc06g030520.1.1	Tomato	cytosol	6.56	26.32
Solyc03g051770.2.1	Tomato	cytosol	13.13	19.05

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:K4C408
PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF5	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc06g009790.2	EnsemblPlants:Solyc06g009790.2.1	UniParc:UPI000276709A
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:3809535..3814061

Molecular Weight (calculated)

49348.3 Da

IEP (calculated)

4.959

GRAVY (calculated)

0.100

Length

457 amino acids

Sequence
(BLAST)

001: MKGLAVLILL LVLSHIIVHT DAQFDGECKF NKPLEPRPHS ASVLDFGAVG DGETLNTLAF QNAIFYLKSF ADKGGAQLYV PAGRWLTGSI KLTSHLTLFL
101: EKEAIILGSK DYAHWDIVEA LPSYGGGIEA QGGRYRSLIF GDNLTDVVIT GNNGTVDGQG SIWWEQFTAH SLNYTRPHLV EFVSSKDVVV SNLTFLNAPA
201: WNIHPVYCSN VVVQNISVHS PANSPYTYGV VPDSSEHVCI ETSNISMGHD AVVLKSGWDE YGISYGKPTS NVHVRGVRLQ SFAGAGMAFG SEMSGGISNV
301: LIEHVYLYDS LLGIELKTAR GRGGYIKDIL VTDVVMANVQ VGIEATGHYD SHPDEKFDPS ALPVVSGITF EDIVGTNVSI AGNFTGLSES PFTSICLSNI
401: TFSISYNPFT SWLCSDVSGF SQNVSPEPCP ELESSFSSTT STCFTLLHHP YSQVAVL

Best Arabidopsis Sequence Match ( AT3G16850.1 )
(BLAST)

001: MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C86]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.