Factsheet for VIT_07s0005g00890.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	67.51	70.77
PGSC0003DMT400018848	Potato	extracellular	65.83	68.71
Solyc06g009790.2.1	Tomato	extracellular	64.99	67.83
PGSC0003DMT400081328	Potato	extracellular	64.57	67.1
KRH69264	Soybean	extracellular	63.73	66.81
KRH31843	Soybean	extracellular	63.1	66.01
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	57.44	64.93
Solyc09g075460.2.1	Tomato	extracellular	64.99	64.58
KRG96478	Soybean	endoplasmic reticulum, extracellular	64.99	64.32
KRH68221	Soybean	extracellular	65.41	62.78
VIT_05s0077g01740.t01	Wine grape	nucleus	31.03	62.71
Os12t0554800-01	Rice	cytosol, extracellular	54.51	61.32
Os11t0658800-01	Rice	extracellular	56.39	59.91
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	56.81	59.3
TraesCS5B01G097100.2	Wheat	extracellular	55.77	59.24
TraesCS5D01G102900.1	Wheat	unclear	55.77	59.24
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	56.18	58.64
KXG29050	Sorghum	extracellular	55.35	58.54
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	55.77	58.21
Zm00001d023813_P001	Maize	extracellular, vacuole	55.97	57.92
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	56.39	56.75
GSMUA_Achr11P...	Banana	extracellular, vacuole	52.62	56.4
Zm00001d048696_P001	Maize	extracellular	54.72	52.83
HORVU5Hr1G023800.7	Barley	plastid	56.6	52.63
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	50.94	52.15
GSMUA_Achr11P...	Banana	extracellular	59.75	51.91
VIT_02s0025g01330.t01	Wine grape	extracellular	44.44	47.43
VIT_02s0025g00260.t01	Wine grape	extracellular	45.49	45.21
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	45.28	45.09
VIT_13s0139g00110.t01	Wine grape	cytosol	9.01	44.79
VIT_00s2630g00010.t01	Wine grape	cytosol	6.08	43.94
GSMUA_Achr11P...	Banana	cytosol	57.02	41.09
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	43.82	40.43
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	39.41	38.13
VIT_16s0050g01120.t01	Wine grape	cytosol	14.68	37.43
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	21.38	21.21
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	42.35	19.22

Protein Annotations

EntrezGene:100247060	wikigene:100247060	Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:CBI36899	ProteinID:CBI36899.3
UniProt:D7U2D3	EMBL:FN596502	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334
EntrezGene:LOC100247060	wikigene:LOC100247060	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF5	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0001BE4B4A	ArrayExpress:VIT_07s0005g00890	EnsemblPlantsGene:VIT_07s0005g00890
EnsemblPlants:VIT_07s0005g00890.t01	RefSeq:XP_002269037	RefSeq:XP_002269037.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:+:3495915..3498463

Molecular Weight (calculated)

51523.0 Da

IEP (calculated)

5.732

GRAVY (calculated)

0.005

Length

477 amino acids

Sequence
(BLAST)

001: MFCSVLLEIK GCVCLCSLHS SNLICVALLL LLALSCAVEH NGVGNDGQCK YKKSLEPRPH SVSILEFGAV GDGKTSNTIA FENAIFYLKS FADKGGAQLY
101: VPPGRWLTGS FNLTSHLTLF LERGATILGS QDFTHWEILD PLPSYGRGIE LPGGRYRSLI NGPNLSDVVI TGNNGTIDGQ GSVWWENFSS HSLNYSRPHI
201: VEFISSNDII ISNLTFLNSP AWNIHPVYCS NVWVQNITAY APPESPRTSG VVPDSSEYIC IEDSNISMGY DAIVLKSGWD EYGIAYGKPT RNVHIRRVWL
301: QSSSGSGLAF GSEMSGGISD ILVEHIHLQD SSTGIKLKTT KGRGGYIKGI LISDVEMENV GLTIGATGQC RSHPDDKYDP GALPVVDGIT FKDMVGTNVS
401: IAGNFSGIYE SPFTSICLFN ISLSITSNSS KPWLCSNVFG SSECVSPEPC PNLQTKTSNS FSTCSSFPYT NTLATVL

Best Arabidopsis Sequence Match ( AT3G16850.1 )
(BLAST)

001: MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C86]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.