Factsheet for VIT_08s0007g07880.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g051770.2.1	Tomato	cytosol	47.61	72.7
KRG95330	Soybean	extracellular, plasma membrane, vacuole	64.86	66.95
TraesCS5D01G271900.1	Wheat	extracellular, plasma membrane, vacuole	60.91	64.11
Os09t0487600-01	Rice	extracellular	60.91	64.11
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	63.41	63.81
CDY02392	Canola	extracellular, plasma membrane, vacuole	63.41	63.81
TraesCS5A01G264400.2	Wheat	unclear	60.5	63.68
CDY12962	Canola	extracellular, plasma membrane, vacuole	63.2	63.6
EER99085	Sorghum	extracellular, plasma membrane	60.91	63.42
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	62.37	63.03
Zm00001d020931_P001	Maize	extracellular	60.91	63.01
AT3G57790.1	Thale cress	extracellular, plasma membrane, vacuole	64.03	62.86
TraesCS3A01G393600.1	Wheat	extracellular	58.84	62.33
TraesCS5B01G263700.2	Wheat	extracellular, plasma membrane	59.67	62.12
HORVU5Hr1G073070.1	Barley	extracellular, plasma membrane, vacuole	59.67	61.85
TraesCS3D01G387300.1	Wheat	unclear	58.21	61.67
HORVU3Hr1G088950.1	Barley	extracellular	57.38	60.79
GSMUA_Achr3P11090_001	Banana	extracellular	58.63	60.78
VIT_00s2630g00010.t01	Wine grape	cytosol	4.37	31.82
VIT_13s0139g00110.t01	Wine grape	cytosol	4.78	23.96
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	23.08	23.82
VIT_02s0025g00260.t01	Wine grape	extracellular	23.7	23.75
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	21.83	23.08
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	23.28	22.72
VIT_16s0050g01120.t01	Wine grape	cytosol	8.73	22.46
VIT_02s0025g01330.t01	Wine grape	extracellular	20.58	22.15
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	22.04	22.13
VIT_07s0005g00890.t01	Wine grape	extracellular	21.21	21.38
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	21.41	19.92
VIT_05s0077g01740.t01	Wine grape	nucleus	8.94	18.22
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	23.91	10.94

Protein Annotations

EntrezGene:100257213	Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:CCB55170	ProteinID:CCB55170.1	UniProt:F6HL63
EMBL:FN595991	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
PANTHER:PTHR31339	PANTHER:PTHR31339:SF10	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM
TIGR:TC66168	UniParc:UPI0001983F44	ArrayExpress:VIT_08s0007g07880	EnsemblPlantsGene:VIT_08s0007g07880	EnsemblPlants:VIT_08s0007g07880.t01	unigene:Vvi.14520
RefSeq:XP_010653818.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:+:21311930..21315653

Molecular Weight (calculated)

53491.4 Da

IEP (calculated)

6.288

GRAVY (calculated)

-0.180

Length

481 amino acids

Sequence
(BLAST)

001: MAATLFHITL FFLLFSIVQS RLYTLPQPII QLPHLPHLFS VADYGAIGDG LHYDTAAIQA TIDACHSAGG GQIRFPPGTY LTATVYIKSG VYLVVEEGAK
101: ILGGTKLEDY PEESRRWYVL LAENATDVGI TGGGVIDGHG MKFVKRFEEA KNVMVSWNET GACLGDECRP RLVGFLGCRN VRVWNIRLNE PAYWCLHLVG
201: CNNTSIHDVS IYGDFNTPNN DGIDIEDSNN TVITRCSIST GDDSICPKTS NGPLYNLTVT NCWLRSRSSA IKLGSGSFYD FKGLVFDNIT IDDSHRGLGM
301: QIRDGGDVSD VTFSNMNIKT RYYEPVLWWG RAEPIYITTC PRDSNSKEGS ISNIRFINIS ATSENGVFLS GSKAGLLSNL RFQNVNFTYR RWTNFPDDLV
401: DYRPGCRGLV KHSPAGMIME HIDGLELENV NMRWSGVIQN KRWNNPLDFL PSTVNNISFL NFQSGSDSVR EIRAPREGSI V

Best Arabidopsis Sequence Match ( AT3G57790.2 )
(BLAST)

001: MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J3I0]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.