Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 6
- golgi 4
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g051770.2.1 | Tomato | cytosol | 64.08 | 96.83 |
| KRG95330 | Soybean | extracellular, plasma membrane, vacuole | 63.87 | 65.24 |
| VIT_08s0007g07880.t01 | Wine grape | extracellular, plasma membrane | 63.03 | 62.37 |
| GSMUA_Achr3P11090_001 | Banana | extracellular | 59.45 | 60.99 |
| AT3G57790.1 | Thale cress | extracellular, plasma membrane, vacuole | 62.6 | 60.82 |
| TraesCS5D01G271900.1 | Wheat | extracellular, plasma membrane, vacuole | 57.56 | 59.96 |
| Bra035299.1-P | Field mustard | extracellular, plasma membrane, vacuole | 60.08 | 59.83 |
| CDY12962 | Canola | extracellular, plasma membrane, vacuole | 60.08 | 59.83 |
| CDY02392 | Canola | extracellular, plasma membrane, vacuole | 60.08 | 59.83 |
| TraesCS5A01G264400.2 | Wheat | unclear | 56.72 | 59.08 |
| Os09t0487600-01 | Rice | extracellular | 56.09 | 58.42 |
| TraesCS3A01G393600.1 | Wheat | extracellular | 55.67 | 58.37 |
| EER99085 | Sorghum | extracellular, plasma membrane | 56.51 | 58.23 |
| TraesCS5B01G263700.2 | Wheat | extracellular, plasma membrane | 56.09 | 57.79 |
| HORVU5Hr1G073070.1 | Barley | extracellular, plasma membrane, vacuole | 56.3 | 57.76 |
| HORVU3Hr1G088950.1 | Barley | extracellular | 55.04 | 57.71 |
| TraesCS3D01G387300.1 | Wheat | unclear | 55.04 | 57.71 |
| Zm00001d020931_P001 | Maize | extracellular | 56.09 | 57.42 |
| PGSC0003DMT400024595 | Potato | cytosol | 22.9 | 22.85 |
| PGSC0003DMT400081328 | Potato | extracellular | 21.64 | 22.44 |
| PGSC0003DMT400055769 | Potato | extracellular | 22.06 | 22.01 |
| PGSC0003DMT400031687 | Potato | extracellular | 20.59 | 21.92 |
| PGSC0003DMT400036866 | Potato | extracellular, golgi | 22.27 | 21.77 |
| PGSC0003DMT400032104 | Potato | extracellular | 21.85 | 21.53 |
| PGSC0003DMT400018848 | Potato | extracellular | 20.59 | 21.44 |
| PGSC0003DMT400000538 | Potato | extracellular | 21.01 | 21.05 |
| PGSC0003DMT400007594 | Potato | extracellular | 21.85 | 21.01 |
| PGSC0003DMT400030711 | Potato | extracellular, golgi, nucleus | 19.54 | 19.14 |
| PGSC0003DMT400094734 | Potato | cytosol | 3.15 | 14.29 |
| PGSC0003DMT400041391 | Potato | cytosol | 4.62 | 13.25 |
| PGSC0003DMT400065330 | Potato | nucleus | 4.2 | 9.76 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0016798 | InterPro:Glyco_hydro_28 |
| InterPro:IPR012334 | UniProt:M1AZG9 | PFAM:PF00295 | EnsemblPlantsGene:PGSC0003DMG400012934 | PGSC:PGSC0003DMG400012934 | EnsemblPlants:PGSC0003DMT400033674 |
| PANTHER:PTHR31339 | PANTHER:PTHR31339:SF10 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SUPFAM:SSF51126 | SignalP:SignalP-noTM |
| UniParc:UPI0002952110 | SEG:seg | : | : | : | : |
Description
Glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012934]
Coordinates
chr3:+:20174648..20183799
Molecular Weight (calculated)
52738.7 Da
IEP (calculated)
7.245
GRAVY (calculated)
-0.162
Length
476 amino acids
Sequence
(BLAST)
(BLAST)
001: MFQLQLLLSI LSLSFAAQSY SSTSQFSILQ SNHHPKPNLL SISVTEFGAA GGGVKYNTIP IQKAIDACST IASKHRRPCH VIFPPGKYLT ATVFVKSGVV
101: LDIHQKATIL GGSKLEDYPK EQSRWYVVLA EDAVDVGIIG GGEINGQGLK FVERFDDKKN VMVSWNHTGA CLGDECRPRL VGFIGCRNIE VSDVRLIEPA
201: YWCLHVVRSD KTSICDVTIY GNFNSPNNDG IDIEDSNNTV ITRCNINTGD DAICPKSSNG PVYNLTATDC WIRTKSSAIK LGSASFYTFK NFLFDNITIV
301: ESHRGLALQI RDGGNASDMI FSNINISTRY YHPSWWGRAE PIYVTTCPRD ASSKAGSISN LLFVNITATS ENGIFLSGSG GGVLSNLKFL NMNLTYKRWT
401: KFPDGLVDYR PGCQELVKHQ PAGFMMEHID GLVVEDVVMK WSSDESMRWN NPLDFRPSTV NNISLLNLYS RSYQEQ
101: LDIHQKATIL GGSKLEDYPK EQSRWYVVLA EDAVDVGIIG GGEINGQGLK FVERFDDKKN VMVSWNHTGA CLGDECRPRL VGFIGCRNIE VSDVRLIEPA
201: YWCLHVVRSD KTSICDVTIY GNFNSPNNDG IDIEDSNNTV ITRCNINTGD DAICPKSSNG PVYNLTATDC WIRTKSSAIK LGSASFYTFK NFLFDNITIV
301: ESHRGLALQI RDGGNASDMI FSNINISTRY YHPSWWGRAE PIYVTTCPRD ASSKAGSISN LLFVNITATS ENGIFLSGSG GGVLSNLKFL NMNLTYKRWT
401: KFPDGLVDYR PGCQELVKHQ PAGFMMEHID GLVVEDVVMK WSSDESMRWN NPLDFRPSTV NNISLLNLYS RSYQEQ
001: MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J3I0]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.