Factsheet for Bra035299.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02392	Canola	extracellular, plasma membrane, vacuole	100.0	100.0
AT3G57790.1	Thale cress	extracellular, plasma membrane, vacuole	87.24	85.1
Solyc03g051770.2.1	Tomato	cytosol	44.77	67.94
KRG95330	Soybean	extracellular, plasma membrane, vacuole	65.06	66.74
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	63.81	63.41
Os09t0487600-01	Rice	extracellular	58.37	61.05
EER99085	Sorghum	extracellular, plasma membrane	58.58	60.61
TraesCS3A01G393600.1	Wheat	extracellular	57.32	60.35
TraesCS3D01G387300.1	Wheat	unclear	57.32	60.35
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	59.83	60.08
TraesCS5D01G271900.1	Wheat	extracellular, plasma membrane, vacuole	57.32	59.96
HORVU3Hr1G088950.1	Barley	extracellular	56.9	59.91
Zm00001d020931_P001	Maize	extracellular	58.16	59.78
GSMUA_Achr3P11090_001	Banana	extracellular	57.95	59.7
TraesCS5A01G264400.2	Wheat	unclear	56.69	59.3
HORVU5Hr1G073070.1	Barley	extracellular, plasma membrane, vacuole	55.86	57.54
TraesCS5B01G263700.2	Wheat	extracellular, plasma membrane	55.44	57.36
Bra013734.1-P	Field mustard	extracellular, vacuole	22.8	24.55
Bra028511.1-P	Field mustard	extracellular	22.8	24.38
Bra019264.1-P	Field mustard	extracellular, vacuole	22.38	23.73
Bra007662.1-P	Field mustard	extracellular, plasma membrane	22.59	23.48
Bra007609.1-P	Field mustard	extracellular	22.8	23.19
Bra003485.1-P	Field mustard	extracellular, golgi	22.18	23.14
Bra011440.1-P	Field mustard	extracellular	22.8	23.0
Bra013697.1-P	Field mustard	extracellular, plasma membrane	23.64	22.92
Bra018004.1-P	Field mustard	cytosol	20.92	22.88
Bra018023.1-P	Field mustard	extracellular	22.38	22.81
Bra019299.1-P	Field mustard	extracellular, plasma membrane	23.43	22.72
Bra001642.1-P	Field mustard	vacuole	21.13	22.39
Bra037005.1-P	Field mustard	extracellular	21.97	22.01
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	23.01	21.91
Bra037429.1-P	Field mustard	extracellular	20.29	21.85
Bra022182.1-P	Field mustard	extracellular, golgi	20.5	21.63
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	22.18	20.91
Bra020656.1-P	Field mustard	extracellular, plasma membrane	20.5	20.85
Bra001215.1-P	Field mustard	extracellular	19.46	20.71
Bra032138.1-P	Field mustard	cytosol	23.43	14.0
Bra007626.1-P	Field mustard	mitochondrion	11.51	9.47

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra035299	EnsemblPlants:Bra035299.1	EnsemblPlants:Bra035299.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005774	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4F2K0	PFAM:PF00295
PANTHER:PTHR31339	PANTHER:PTHR31339:SF10	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI000253E5D8	SEG:seg	:	:	:	:

Description

AT3G57790 (E=2e-234) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrScaffold000103:+:141188..142760

Molecular Weight (calculated)

52672.2 Da

IEP (calculated)

5.380

GRAVY (calculated)

-0.072

Length

478 amino acids

Sequence
(BLAST)

001: MDFPLLLRSI LLPLCLLFSV IQSRPYTSSQ KIQLPGDSLA LSVADFGATG DGIHYDTSAI QSAINACNHH YTSSSSICRV KFPLGTYLTA KLHLRSGVLL
101: DVTENAVLLG GPRIEDYPAE TSSEWYVVVA NNATDVGITG GGAIDGQGSK FVVRFDERKN VMVSWNQTGA CLGDECRPRL VGFVDSTNVH IWNITLRDPA
201: YWCLHIVRCE NTSVHDVSIL GDFNTPNNDG IDIEDSNNTF ITRCHIDTGD DAICPKTYVA PLYNLTVTDC WIRTKSSAIK LGSASWFEFK SLVFDNITIS
301: ESHRGLGMQI RDGGNVNGIT FSNMNISTRY YDPSWWGRAE PIYITTCPRD SSSKEGSISN LLFVNITIVS ENGVFLSGSP NGLLTDIKFK NMNITLRRWS
401: NYTSGLVDYR PGCQGLMNHS ATAGIIMEHV NGFSVENVDL KWSDDNLNAW NVPLEFRPST VNNVSFVGFS SGLLHEIV

Best Arabidopsis Sequence Match ( AT3G57790.2 )
(BLAST)

001: MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J3I0]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.