Factsheet for TraesCS5D01G271900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G264400.2	Wheat	unclear	96.94	96.94
TraesCS5B01G263700.2	Wheat	extracellular, plasma membrane	94.53	93.51
HORVU5Hr1G073070.1	Barley	extracellular, plasma membrane, vacuole	94.75	93.32
Os09t0487600-01	Rice	extracellular	89.06	89.06
TraesCS3D01G387300.1	Wheat	unclear	86.65	87.22
EER99085	Sorghum	extracellular, plasma membrane	87.09	86.15
Zm00001d020931_P001	Maize	extracellular	85.78	84.3
GSMUA_Achr3P11090_001	Banana	extracellular	69.37	68.32
Solyc03g051770.2.1	Tomato	cytosol	45.08	65.4
KRG95330	Soybean	extracellular, plasma membrane, vacuole	63.68	62.45
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	64.11	60.91
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	59.96	57.56
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	59.96	57.32
CDY02392	Canola	extracellular, plasma membrane, vacuole	59.96	57.32
CDY12962	Canola	extracellular, plasma membrane, vacuole	59.74	57.11
AT3G57790.1	Thale cress	extracellular, plasma membrane, vacuole	60.83	56.73
TraesCS6D01G320600.1	Wheat	mitochondrion	25.38	23.43
TraesCS7D01G320900.1	Wheat	plastid	24.73	23.3
TraesCS3D01G230000.1	Wheat	extracellular	22.32	22.67
TraesCS5D01G102900.1	Wheat	unclear	21.44	21.83
TraesCS5D01G219200.1	Wheat	plastid	25.16	21.66
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	20.57	20.57
TraesCS7D01G016300.2	Wheat	extracellular	21.01	19.63
TraesCS5D01G513600.1	Wheat	plastid	22.54	19.4

Protein Annotations

EnsemblPlants:TraesCS5D01G271900.1	EnsemblPlantsGene:TraesCS5D01G271900	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF10	PFAM:PF00295
SEG:seg	SignalP:SignalP-noTM	SMART:SM00710	SUPFAM:SSF51126	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr5D:-:375310236..375312368

Molecular Weight (calculated)

49836.2 Da

IEP (calculated)

7.223

GRAVY (calculated)

-0.162

Length

457 amino acids

Sequence
(BLAST)

001: MAAPPLLLLA ALLLLLPAAA RPAPARVFSV ADYGAAGDGS RYDTAAIQAA VDACAAAGGG RVLLPAPGDY LTATVRLRSG VVLDVAPGAR LLGGTRQRDY
101: PPESRRWYVV LAENTTGAGV TGGGEINGQG GAFVVTPSAQ KNIMVSWNAT GDCLGDECRP RLVGFINSKD VAVHDITLNQ PALWCLHLVR CDNSVIRNVS
201: IYGDFNTPNN DGIDIEDSNN TIITDCHIDT GDDAICPKSS TGPVYNLTAT NCWIRTKSCA IKFGSASFFN FEKLLFDNIT IVDSHRGLGM QIRDGGNVSD
301: VTFSNIKMRT RYYHPSWWGR AEPIYITTCP RHPDSKEGTI SDVRFINISS VSENGVFLAG SKHGLLRNLK FQNVDLTYKR WTNYTGGLYD YRPGCQKMVK
401: HRTGGMMLEH ISGLEVDNVR MRWSRGSLEG WDVNPLLFRP STIDGLSFHD WQSLDVQ

Best Arabidopsis Sequence Match ( AT3G57790.2 )
(BLAST)

001: MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J3I0]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.