Factsheet for TraesCS6D01G320600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
extracellular 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	extracellular, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G340000.1	Wheat	mitochondrion	98.99	98.99
TraesCS6B01G371200.2	Wheat	mitochondrion	97.78	97.78
Os02t0781000-01	Rice	extracellular	49.9	86.67
Zm00001d052103_P001	Maize	plasma membrane	85.25	85.25
EES05901	Sorghum	extracellular, golgi	85.66	84.8
KRH19342	Soybean	endoplasmic reticulum	69.7	70.26
KRH02590	Soybean	extracellular, golgi, mitochondrion, plastid	69.09	69.51
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	66.87	67.14
CDX83782	Canola	extracellular, golgi, plastid	68.48	66.86
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	68.28	66.67
CDX96676	Canola	extracellular, golgi, plastid	68.28	66.67
AT1G19170.1	Thale cress	cytosol, extracellular, mitochondrion, peroxisome	67.47	66.01
PGSC0003DMT400007594	Potato	extracellular	65.05	65.05
Solyc12g009210.1.1	Tomato	nucleus	64.65	64.65
Solyc07g042160.2.1	Tomato	nucleus	64.24	64.37
KRH12568	Soybean	plastid	63.03	63.8
KRH37525	Soybean	extracellular, plasma membrane	63.43	63.56
AT3G42950.1	Thale cress	extracellular, golgi	61.82	63.22
GSMUA_Achr11P...	Banana	mitochondrion	62.22	62.73
CDY27797	Canola	extracellular, mitochondrion, plastid	63.43	62.67
CDY53228	Canola	extracellular	14.14	62.5
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	63.23	62.35
CDY41934	Canola	extracellular, mitochondrion, plastid	63.23	62.35
Solyc03g117750.2.1	Tomato	extracellular, golgi	60.61	61.6
PGSC0003DMT400036866	Potato	extracellular, golgi	60.0	60.99
KRH55874	Soybean	cytosol	7.88	59.09
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	58.59	58.12
TraesCS5D01G219200.1	Wheat	plastid	61.21	57.06
TraesCS3D01G230000.1	Wheat	extracellular	39.19	43.11
TraesCS7D01G320900.1	Wheat	plastid	41.82	42.68
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	37.58	40.7
TraesCS5D01G102900.1	Wheat	unclear	36.36	40.09
TraesCS7D01G016300.2	Wheat	extracellular	39.19	39.67
TraesCS5D01G513600.1	Wheat	plastid	39.6	36.91
TraesCS3D01G387300.1	Wheat	unclear	24.04	26.21
TraesCS5D01G271900.1	Wheat	extracellular, plasma membrane, vacuole	23.43	25.38

Protein Annotations

EnsemblPlants:TraesCS6D01G320600.1	EnsemblPlantsGene:TraesCS6D01G320600	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	PFAM:PF00295
SEG:seg	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr6D:+:428641253..428644114

Molecular Weight (calculated)

54314.9 Da

IEP (calculated)

9.193

GRAVY (calculated)

-0.164

Length

495 amino acids

Sequence
(BLAST)

001: MVETSGGRWR LHLHGQRRSA AAFLAANKTL LAAVWVAGFA LVFLWQSASV FVAGGGGGPR PPPAPSRPAP RLRPMAYNLT DFGGVGDGRA VNTRAFERAV
101: ETVSAFADQG GAQLNVPPGR WLTGPFNLTS HMTLFLAEGA EILGITDEKD WPLMPALPSY GYGRERKGPR FCSLIHGQNL KDVVITGHNG SINGQGEVWW
201: LKHRRRMLKN TRPPLVQLMW SKDIVITNIT LRNSPFWHFH PYDCTNVTVS DVTILAPISG APNTDGIDPD SCEDVLIENC YISVGDDAIA IKSGWDQYGI
301: AYGRPSSNIL IRNVTVRSLV SAGISIGSEM SGGVANVTVK NVRIWDSRRG VRIKTAIGRG GYIRNISYSN ITFDNVRAAI VIKVDYNEHA DDGYDRNAFP
401: DITGISFKKI HGWGVRVPVR AHGSNYIPIK DITFQDMSVG ISYKKKHIFQ CSYIEGRVIG SVFPKPCENL DVYDEQGQLL KSGAVLNSTE VDYDI

Best Arabidopsis Sequence Match ( AT1G19170.1 )
(BLAST)

001: MVENLFPSRF QFHLQRLDPK RRLTSLLASH KTLFTFLWIT AFGSVFLWQR TAYIEGGSGT GPVGGKFTIF GKIKPIQPIP RLRPVVFDLK DFGGVGDGFT
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE17]
SUBAcon: [mitochondrion,peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.