Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- extracellular 1
- cytosol 1
- peroxisome 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83782 | Canola | extracellular, golgi, plastid | 90.91 | 90.73 |
| CDX96676 | Canola | extracellular, golgi, plastid | 90.51 | 90.34 |
| Bra016521.1-P | Field mustard | extracellular, golgi, plastid | 90.32 | 90.14 |
| KRH19342 | Soybean | endoplasmic reticulum | 73.91 | 76.17 |
| KRH02590 | Soybean | extracellular, golgi, mitochondrion, plastid | 73.72 | 75.81 |
| VIT_11s0016g00720.t01 | Wine grape | extracellular, peroxisome, plastid | 72.33 | 74.24 |
| GSMUA_Achr5P22120_001 | Banana | extracellular | 71.94 | 73.98 |
| KRH12568 | Soybean | plastid | 71.34 | 73.82 |
| GSMUA_Achr9P18190_001 | Banana | mitochondrion | 70.95 | 73.12 |
| KRH37525 | Soybean | extracellular, plasma membrane | 71.15 | 72.87 |
| GSMUA_Achr3P10280_001 | Banana | mitochondrion | 68.38 | 72.23 |
| PGSC0003DMT400007594 | Potato | extracellular | 69.76 | 71.31 |
| Solyc12g009210.1.1 | Tomato | nucleus | 69.17 | 70.71 |
| AT3G42950.1 | Thale cress | extracellular, golgi | 67.0 | 70.04 |
| Solyc07g042160.2.1 | Tomato | nucleus | 68.38 | 70.04 |
| Os02t0781000-01 | Rice | extracellular | 38.93 | 69.12 |
| TraesCS6B01G371200.2 | Wheat | mitochondrion | 66.8 | 68.28 |
| EES05901 | Sorghum | extracellular, golgi | 66.8 | 67.6 |
| TraesCS6A01G340000.1 | Wheat | mitochondrion | 66.01 | 67.47 |
| TraesCS6D01G320600.1 | Wheat | mitochondrion | 66.01 | 67.47 |
| Zm00001d052103_P001 | Maize | plasma membrane | 65.42 | 66.87 |
| GSMUA_Achr11P... | Banana | mitochondrion | 63.44 | 65.38 |
| GSMUA_Achr8P23620_001 | Banana | extracellular, golgi, mitochondrion, plasma membrane | 62.25 | 63.13 |
| AT4G23820.1 | Thale cress | extracellular, vacuole | 39.33 | 44.82 |
| AT5G41870.1 | Thale cress | extracellular | 37.94 | 42.76 |
| AT4G33440.1 | Thale cress | extracellular | 40.12 | 42.74 |
| AT3G62110.1 | Thale cress | vacuole | 37.94 | 40.76 |
| AT3G48950.1 | Thale cress | extracellular | 37.15 | 40.09 |
| AT3G16850.1 | Thale cress | vacuole | 35.18 | 39.12 |
| AT4G23500.1 | Thale cress | extracellular, plasma membrane | 37.55 | 38.38 |
| AT2G23900.1 | Thale cress | extracellular | 35.57 | 37.74 |
| AT5G49215.1 | Thale cress | extracellular, vacuole | 32.81 | 36.97 |
| AT3G06770.5 | Thale cress | extracellular | 32.02 | 36.24 |
| AT3G61490.4 | Thale cress | cytosol, plastid | 36.76 | 31.58 |
| AT3G57790.1 | Thale cress | extracellular, plasma membrane, vacuole | 21.15 | 21.84 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:838500 | UniProt:A0A178W484 | ProteinID:AEE29813.1 | ArrayExpress:AT1G19170 |
| EnsemblPlantsGene:AT1G19170 | RefSeq:AT1G19170 | TAIR:AT1G19170 | RefSeq:AT1G19170-TAIR-G | EnsemblPlants:AT1G19170.1 | TAIR:AT1G19170.1 |
| Unigene:At.41758 | UniProt:F4IE17 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0016798 | GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 |
| RefSeq:NP_173351.1 | ProteinID:OAP12511.1 | PFAM:PF00295 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF21 | InterPro:PbH1 |
| InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | UniParc:UPI000004828B | SEG:seg |
Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE17]
Coordinates
chr1:+:6616602..6619006
Molecular Weight (calculated)
56350.6 Da
IEP (calculated)
9.280
GRAVY (calculated)
-0.193
Length
506 amino acids
Sequence
(BLAST)
(BLAST)
001: MVENLFPSRF QFHLQRLDPK RRLTSLLASH KTLFTFLWIT AFGSVFLWQR TAYIEGGSGT GPVGGKFTIF GKIKPIQPIP RLRPVVFDLK DFGGVGDGFT
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.