Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028511.1-P | Field mustard | extracellular | 89.31 | 89.71 |
| CDX67513 | Canola | extracellular | 89.09 | 89.49 |
| CDY13383 | Canola | extracellular | 87.97 | 88.76 |
| GSMUA_Achr8P19900_001 | Banana | cytosol | 62.14 | 67.23 |
| KRH14547 | Soybean | extracellular | 66.59 | 67.04 |
| KRH73576 | Soybean | extracellular | 40.98 | 66.67 |
| VIT_02s0025g01330.t01 | Wine grape | extracellular | 65.92 | 66.22 |
| KRG99037 | Soybean | nucleus | 65.03 | 66.06 |
| GSMUA_Achr10P... | Banana | cytosol | 60.58 | 66.02 |
| AT4G23820.1 | Thale cress | extracellular, vacuole | 65.26 | 65.99 |
| GSMUA_Achr6P14280_001 | Banana | cytosol | 59.02 | 65.92 |
| KRH45957 | Soybean | extracellular | 64.59 | 65.46 |
| PGSC0003DMT400031687 | Potato | extracellular | 64.59 | 64.88 |
| Os01t0618900-01 | Rice | cytosol, extracellular | 46.1 | 62.92 |
| GSMUA_Achr4P08470_001 | Banana | extracellular | 57.46 | 62.77 |
| GSMUA_Achr4P15650_001 | Banana | extracellular, plasma membrane, vacuole | 56.12 | 62.07 |
| Solyc08g082170.2.1 | Tomato | nucleus | 64.37 | 61.88 |
| EES04867 | Sorghum | extracellular, plasma membrane | 58.8 | 58.93 |
| EES01085 | Sorghum | extracellular | 58.35 | 58.61 |
| EES20030 | Sorghum | extracellular | 57.24 | 58.54 |
| Zm00001d053395_P001 | Maize | extracellular | 58.8 | 58.54 |
| Os02t0256100-01 | Rice | extracellular | 57.46 | 58.24 |
| TraesCS3B01G253000.1 | Wheat | extracellular | 58.13 | 58.0 |
| Os05t0587000-01 | Rice | extracellular | 57.46 | 57.59 |
| TraesCS3D01G230000.1 | Wheat | extracellular | 57.46 | 57.33 |
| Zm00001d009717_P001 | Maize | extracellular | 54.34 | 54.71 |
| Zm00001d011369_P001 | Maize | extracellular | 53.67 | 54.16 |
| AT4G33440.1 | Thale cress | extracellular | 50.78 | 48.0 |
| HORVU3Hr1G054810.4 | Barley | extracellular | 57.02 | 47.32 |
| AT3G16850.1 | Thale cress | vacuole | 45.66 | 45.05 |
| AT3G62110.1 | Thale cress | vacuole | 47.22 | 45.01 |
| AT3G06770.5 | Thale cress | extracellular | 42.98 | 43.18 |
| AT5G49215.1 | Thale cress | extracellular, vacuole | 42.54 | 42.54 |
| AT3G48950.1 | Thale cress | extracellular | 41.87 | 40.09 |
| AT4G23500.1 | Thale cress | extracellular, plasma membrane | 43.21 | 39.19 |
| AT3G42950.1 | Thale cress | extracellular, golgi | 42.09 | 39.05 |
| AT2G23900.1 | Thale cress | extracellular | 40.98 | 38.57 |
| AT1G19170.1 | Thale cress | cytosol, extracellular, mitochondrion, peroxisome | 42.76 | 37.94 |
| AT3G61490.4 | Thale cress | cytosol, plastid | 43.21 | 32.94 |
| AT3G57790.1 | Thale cress | extracellular, plasma membrane, vacuole | 24.28 | 22.24 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:834192 | ProteinID:AED94738.1 | ArrayExpress:AT5G41870 | EnsemblPlantsGene:AT5G41870 |
| RefSeq:AT5G41870 | TAIR:AT5G41870 | RefSeq:AT5G41870-TAIR-G | EnsemblPlants:AT5G41870.1 | TAIR:AT5G41870.1 | Unigene:At.27978 |
| ProteinID:BAB10662.1 | EMBL:BT015129 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0016798 | GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 |
| RefSeq:NP_199002.1 | PFAM:PF00295 | PO:PO:0000005 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0025022 | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF3 | InterPro:PbH1 |
| InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q9FJ27 | SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-noTM |
| UniParc:UPI0000048BED | SEG:seg | : | : | : | : |
Description
At5g41870 [Source:UniProtKB/TrEMBL;Acc:Q9FJ27]
Coordinates
chr5:-:16758709..16760576
Molecular Weight (calculated)
48646.7 Da
IEP (calculated)
7.369
GRAVY (calculated)
-0.178
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MKISQAPISV FVLFLLSTVL PHHLSLGAPI TCSGIVPMKH RNEMLSISDF GAVGDGKTLN TKAFNSAIDR IRNSNNSNEG TLLYVPRGVY LTQSFNLTSH
101: MTLYLADGAV IKAVQDTEKW PLTDPLPSYG RGREHPGRRY ISFIHGDGLN DVVITGRNGT IDGQGEPWWN MWRHGTLKFT RPGLIEFNNS TNILVSHVVL
201: QNSPFWTLHP VYCSNVVVHH VTILAPTDSY NTDGIDPDSS SNVCIEDSYI STGDDLVAVK SGWDEYGIAY NRPSRDITIR RITGSSPFAG IAIGSETSGG
301: IQNVTVENIT LYNSGIGIHI KTNIGRGGSI QGITISGVYL EKVRTGIKIS GDTGDHPDDK FNTSALPIVR GITIKNVWGI KVERAGMVQG LKDSPFTNLC
401: FSNVTLTGTK RSPIWKCSDV VGAADKVNPT PCPELSATTQ QGGSCENQS
101: MTLYLADGAV IKAVQDTEKW PLTDPLPSYG RGREHPGRRY ISFIHGDGLN DVVITGRNGT IDGQGEPWWN MWRHGTLKFT RPGLIEFNNS TNILVSHVVL
201: QNSPFWTLHP VYCSNVVVHH VTILAPTDSY NTDGIDPDSS SNVCIEDSYI STGDDLVAVK SGWDEYGIAY NRPSRDITIR RITGSSPFAG IAIGSETSGG
301: IQNVTVENIT LYNSGIGIHI KTNIGRGGSI QGITISGVYL EKVRTGIKIS GDTGDHPDDK FNTSALPIVR GITIKNVWGI KVERAGMVQG LKDSPFTNLC
401: FSNVTLTGTK RSPIWKCSDV VGAADKVNPT PCPELSATTQ QGGSCENQS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.