Factsheet for VIT_02s0025g01330.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031687	Potato	extracellular	76.96	76.96
KRH45957	Soybean	extracellular	74.72	75.39
KRG99037	Soybean	nucleus	74.5	75.34
KRH14547	Soybean	extracellular	74.27	74.44
AT4G23820.1	Thale cress	extracellular, vacuole	73.38	73.87
Solyc08g082170.2.1	Tomato	nucleus	76.73	73.45
CDY47619	Canola	extracellular, vacuole	72.71	73.2
GSMUA_Achr8P19900_001	Banana	cytosol	67.79	73.01
CDY03516	Canola	extracellular, vacuole	72.48	72.97
Bra013734.1-P	Field mustard	extracellular, vacuole	72.48	72.97
GSMUA_Achr10P...	Banana	cytosol	67.11	72.82
KRH73576	Soybean	extracellular	44.52	72.1
CDY10970	Canola	extracellular, vacuole	71.36	70.73
CDX94222	Canola	extracellular	71.14	70.51
GSMUA_Achr6P14280_001	Banana	cytosol	63.31	70.4
Bra019264.1-P	Field mustard	extracellular, vacuole	70.92	70.29
GSMUA_Achr4P08470_001	Banana	extracellular	62.64	68.13
Os01t0618900-01	Rice	cytosol, extracellular	49.44	67.17
AT5G41870.1	Thale cress	extracellular	66.22	65.92
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	59.06	65.02
CDX67513	Canola	extracellular	64.88	64.88
Bra028511.1-P	Field mustard	extracellular	64.88	64.88
EES20030	Sorghum	extracellular	63.53	64.69
Os05t0587000-01	Rice	extracellular	64.43	64.29
CDY13383	Canola	extracellular	63.98	64.27
Os02t0256100-01	Rice	extracellular	63.53	64.11
TraesCS3B01G253000.1	Wheat	extracellular	63.31	62.89
EES04867	Sorghum	extracellular, plasma membrane	62.42	62.28
TraesCS3D01G230000.1	Wheat	extracellular	62.64	62.22
Zm00001d053395_P001	Maize	extracellular	61.74	61.2
Zm00001d009717_P001	Maize	extracellular	60.4	60.54
EES01085	Sorghum	extracellular	60.4	60.4
Zm00001d011369_P001	Maize	extracellular	58.39	58.65
HORVU3Hr1G054810.4	Barley	extracellular	62.19	51.39
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	48.32	46.35
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	46.53	45.71
VIT_07s0005g00890.t01	Wine grape	extracellular	47.43	44.44
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	46.53	43.42
VIT_02s0025g00260.t01	Wine grape	extracellular	45.86	42.71
VIT_05s0077g01740.t01	Wine grape	nucleus	21.7	41.1
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	46.53	40.23
VIT_13s0139g00110.t01	Wine grape	cytosol	8.5	39.58
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	43.4	39.35
VIT_00s2630g00010.t01	Wine grape	cytosol	5.59	37.88
VIT_16s0050g01120.t01	Wine grape	cytosol	13.2	31.55
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	22.15	20.58
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	43.4	18.46

Protein Annotations

EntrezGene:100250089	Gene3D:2.160.20.10	MapMan:50.3.2	EMBL:AM427417	ProteinID:CAN69072	ProteinID:CAN69072.1
ProteinID:CBI34471	ProteinID:CBI34471.3	UniProt:D7TVE6	EMBL:FN596251	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0016829	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF3	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	TIGR:TC63732
TIGR:TC70572	TMHMM:TMhelix	UniParc:UPI0001BE458F	ArrayExpress:VIT_02s0025g01330	EnsemblPlantsGene:VIT_02s0025g01330	EnsemblPlants:VIT_02s0025g01330.t01
unigene:Vvi.215	RefSeq:XP_010659126.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:1253057..1258513

Molecular Weight (calculated)

48595.4 Da

IEP (calculated)

8.156

GRAVY (calculated)

0.025

Length

447 amino acids

Sequence
(BLAST)

001: MCRFVVWIFL CFAATALFLT RLVLAGDVTC SGIVPMRHRN DVISIKDFGG VGDGKTLNTK AFRAAIYRIE HLRRRGGTLL YIPPGVYLTE SFNLTSHMTL
101: YLSKDAVIRA TQDTGSWPLI APLPSYGRGR ELPGGRYMSF IHADGVHDVI ITGENGTIDG QGEVWWNMWR QRTLQFTRPN LIELINSRNI IISNVIFRDS
201: PFWNIHPVYC RNVVVQFVTI LAPHDSPNTD GIDPDSSSNV CIEDSYISTG DDLVAVKSGW DEYGIAYGRP SSGITIRRIT GSSPFAGIAV GSETSGGVQN
301: VFAEHINLYN MGVGIHLKTN IGRGGVIRNI TVSNVYMEKA RTGIKIAGDV GDHPDDNFNP NALPVVKGVV IRDVWGLDVL QPGSIIGLKN SPFTGICLSK
401: INLHGKIKPG TAPWKCSDVS GAAVGVSPWP CSELTSPGQT GSCSSFI

Best Arabidopsis Sequence Match ( AT4G23820.1 )
(BLAST)

001: MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL
101: AKGAVIRAVQ DTWNWPLIDP LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI EFKDSKEIII SNVIFQNSPF
201: WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301: AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN
401: LHGSLNSYKT WKCSDVSGTS LKVSPWPCSE LRTTGGSNLC SSTF

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SUP5]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.