Factsheet for VIT_04s0044g01420.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53903	Soybean	extracellular, plasma membrane, plastid	66.34	71.91
CDX75352	Canola	extracellular	64.22	70.34
Bra011440.1-P	Field mustard	extracellular	64.22	70.04
AT4G33440.1	Thale cress	extracellular	64.22	69.89
CDX68976	Canola	extracellular	63.64	69.85
CDY46115	Canola	extracellular	63.83	69.77
CDX72404	Canola	extracellular	63.44	69.34
Bra037005.1-P	Field mustard	extracellular	63.25	68.55
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	62.48	66.46
Solyc06g060170.2.1	Tomato	cytosol, golgi, plasma membrane	62.09	65.78
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	54.16	63.35
TraesCS7D01G320900.1	Wheat	plastid	56.48	60.21
TraesCS7A01G323800.3	Wheat	plastid	56.29	60.0
TraesCS7B01G224700.1	Wheat	plastid	55.9	59.59
Os08t0107300-00	Rice	extracellular, mitochondrion	54.35	58.3
Zm00001d034990_P001	Maize	plasma membrane	54.35	57.0
KXG24195	Sorghum	endoplasmic reticulum, extracellular, plasma membrane, plastid	54.74	56.94
HORVU7Hr1G077560.12	Barley	plastid	47.2	50.52
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	44.29	49.14
Zm00001d021964_P001	Maize	cytosol	15.67	48.21
VIT_02s0025g01330.t01	Wine grape	extracellular	40.23	46.53
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	40.43	45.93
VIT_02s0025g00260.t01	Wine grape	extracellular	41.59	44.79
VIT_07s0005g00890.t01	Wine grape	extracellular	40.43	43.82
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	39.46	42.59
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	40.43	42.39
VIT_00s2630g00010.t01	Wine grape	cytosol	5.22	40.91
VIT_05s0077g01740.t01	Wine grape	nucleus	18.18	39.83
VIT_13s0139g00110.t01	Wine grape	cytosol	6.96	37.5
VIT_16s0050g01120.t01	Wine grape	cytosol	12.19	33.69
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	19.92	21.41
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	39.46	19.41

Protein Annotations

EntrezGene:100252291	wikigene:100252291	Gene3D:2.160.20.10	MapMan:50.3.2	EMBL:AM461697	ProteinID:CAN76963
ProteinID:CAN76963.1	ProteinID:CCB60404	ProteinID:CCB60404.1	UniProt:F6I0D8	EMBL:FN596506	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	EntrezGene:LOC100252291	wikigene:LOC100252291	PFAM:PF00295	PFscan:PS51257
PANTHER:PTHR31339	PANTHER:PTHR31339:SF4	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI00021094A0	ArrayExpress:VIT_04s0044g01420	EnsemblPlantsGene:VIT_04s0044g01420
EnsemblPlants:VIT_04s0044g01420.t01	RefSeq:XP_002274138	RefSeq:XP_002274138.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:22947573..22951152

Molecular Weight (calculated)

56510.8 Da

IEP (calculated)

7.066

GRAVY (calculated)

-0.081

Length

517 amino acids

Sequence
(BLAST)

001: MGGFTRPSWA FLLLVFIVLV VSCFQIGTKT VFPRWVVLGG GETGISEEAP SCFGLFREVP PRKVVMSIRD FGGVGDGVTS NTETFRRAIR YMQSFGNIGG
101: SQLNVPRGRW VTGSFNLTSN FTLFLEEGAV ILGSQDLEDW PIIEPLPSYG RGRERLGGRH ISLIHGDALA NVVITGQNGT IDGQGKMWWE LWWNRTLEHT
201: RGHLLEIKNS HNILISNLTF MNSPFWTIHP VYCSNVVIKD VTILAPLNAP NTDGIDPDSS TNVCIEDCYI ESGDDLVAVK SGWDQYGIAM ARPSSNIIVR
301: RLSGTTPTCS GVGIGSEMSG GISNVTMEDL HIWDSAAGVR IKTDKGRGGY VVNITINNIR MERVKVPIRF SRGSNDHPDD GWDPKAVPKI KGIFISNVVS
401: LNSTKAPLLE GIEGAPYEGI CMKNVTLLGL APAAKWHCEF VSGFTDAVFP VSCPQMQSNV SSSWCLDHLG NLQIDSSRKS SRKSVTLGMA MGQSQQNPEL
501: IRELTPTHPN LPTKGMV

Best Arabidopsis Sequence Match ( AT4G33440.1 )
(BLAST)

001: MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84K13]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.