Factsheet for TraesCS7A01G323800.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G320900.1	Wheat	plastid	98.97	98.97
TraesCS7B01G224700.1	Wheat	plastid	98.14	98.14
Os08t0107300-00	Rice	extracellular, mitochondrion	83.09	83.61
KXG24195	Sorghum	endoplasmic reticulum, extracellular, plasma membrane, plastid	82.89	80.89
HORVU7Hr1G077560.12	Barley	plastid	79.59	79.92
Zm00001d034990_P001	Maize	plasma membrane	80.0	78.7
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	56.49	61.99
CDX75352	Canola	extracellular	60.21	61.86
CDX68976	Canola	extracellular	59.79	61.57
Bra011440.1-P	Field mustard	extracellular	60.0	61.39
KRH53903	Soybean	extracellular, plasma membrane, plastid	59.79	60.8
CDY46115	Canola	extracellular	58.56	60.04
AT4G33440.1	Thale cress	extracellular	58.76	60.0
CDX72404	Canola	extracellular	58.14	59.62
Bra037005.1-P	Field mustard	extracellular	58.14	59.12
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	60.0	56.29
Solyc06g060170.2.1	Tomato	cytosol, golgi, plasma membrane	56.49	56.15
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	56.08	55.97
TraesCS4A01G358700.1	Wheat	extracellular	45.15	48.78
TraesCS5A01G513600.1	Wheat	extracellular	42.27	45.45
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	40.41	42.89
TraesCS6A01G340000.1	Wheat	mitochondrion	42.27	41.41
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	44.33	41.27
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	39.38	40.3
TraesCS5A01G212900.1	Wheat	plastid	43.92	40.11
TraesCS7A01G019900.1	Wheat	cytosol	19.18	34.7
TraesCS7A01G019500.1	Wheat	cytosol	18.56	33.58
TraesCS3A01G393600.1	Wheat	extracellular	23.51	25.11
TraesCS5A01G264400.2	Wheat	unclear	23.09	24.51
TraesCS7A01G019700.1	Wheat	cytosol	5.57	21.95

Protein Annotations

EnsemblPlants:TraesCS7A01G323800.3	EnsemblPlantsGene:TraesCS7A01G323800	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF4	PFAM:PF00295
SEG:seg	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr7A:-:471000603..471003828

Molecular Weight (calculated)

52061.9 Da

IEP (calculated)

6.820

GRAVY (calculated)

-0.025

Length

485 amino acids

Sequence
(BLAST)

001: MAHATVHGAP MTRPCPRPSA PLIVFLVLLA SCYLALTRLP SAAPLAALIA PSAGHGSGHG AVDSCAGFYR GAGAAGRRAV TASVEEFGAV GDGVTSNTAA
101: FRRAVAALEE RGAGGGARLE VPAGRWLTGS FNLTSRFTLF LHHGAVILGS QDPEEWPLIA PLPSYGRGRE RLGPRHISLI HGQDLNDVVI TGSNGTIDGQ
201: GRMWWELWWN RTLNHTRGHL IELVNSTNVL ISNVTLRNSP FWTVHPVYCR NVVIKDLTIL APLNAPNTDG IDPDSSSEVC IEDCYIESGD DLVAVKSGWD
301: QYGISVGKPS SNIIIQRVSG TTPTCSGVGF GSEMSGGISN VLVRDLHIWN SASAVRLKTD VGRGGYITNI TIANVTMEKV KVPIRFSRGS DDHSDDKYDR
401: TALPMISDIH IVDIVGVDVQ RAPMLEAVHG AVYEGICFRN VSLTAIRRQI RWQCESVYGE AHEVFPAPCE ELRNNGSSSS WCGLP

Best Arabidopsis Sequence Match ( AT4G33440.1 )
(BLAST)

001: MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84K13]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.