Factsheet for TraesCS3A01G393600.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G387300.1	Wheat	unclear	97.36	97.36
HORVU3Hr1G088950.1	Barley	extracellular	92.73	92.73
TraesCS5A01G264400.2	Wheat	unclear	86.78	86.21
Os09t0487600-01	Rice	extracellular	84.36	83.81
EER99085	Sorghum	extracellular, plasma membrane	82.6	81.17
Zm00001d020931_P001	Maize	extracellular	82.16	80.22
GSMUA_Achr3P11090_001	Banana	extracellular	70.93	69.4
Solyc03g051770.2.1	Tomato	cytosol	43.83	63.17
KRG95330	Soybean	extracellular, plasma membrane, vacuole	62.78	61.16
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	62.33	58.84
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	60.35	57.32
CDY02392	Canola	extracellular, plasma membrane, vacuole	60.35	57.32
CDY12962	Canola	extracellular, plasma membrane, vacuole	60.13	57.11
AT3G57790.1	Thale cress	extracellular, plasma membrane, vacuole	60.35	55.92
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	58.37	55.67
TraesCS6A01G340000.1	Wheat	mitochondrion	25.77	23.64
TraesCS7A01G323800.3	Wheat	plastid	25.11	23.51
TraesCS4A01G358700.1	Wheat	extracellular	23.13	23.39
TraesCS5A01G513600.1	Wheat	extracellular	23.13	23.28
TraesCS5A01G212900.1	Wheat	plastid	26.43	22.6
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	20.93	20.79
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	21.37	20.46
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	20.48	17.85
TraesCS7A01G019500.1	Wheat	cytosol	9.03	15.3
TraesCS7A01G019900.1	Wheat	cytosol	9.03	15.3
TraesCS7A01G019700.1	Wheat	cytosol	3.08	11.38

Protein Annotations

EnsemblPlants:TraesCS3A01G393600.1	EnsemblPlantsGene:TraesCS3A01G393600	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF10	PFAM:PF00295
SEG:seg	SignalP:SignalP-noTM	SMART:SM00710	SUPFAM:SSF51126	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr3A:+:641558064..641559633

Molecular Weight (calculated)

49900.1 Da

IEP (calculated)

7.737

GRAVY (calculated)

-0.215

Length

454 amino acids

Sequence
(BLAST)

001: MAASHLLLLL LLLAPVADSA ATRVFSVTDY GAAGDGSSYD TAAIQAAVNA CGEAGGGRVL LPAPGDYLTA TVHLRSRVVL EVAPGARLLG GTRQRDYPAE
101: RRRWYVVLAE NTTGAGVTGG GEINGQGGAF VVRPSDQKNV MVSWNATGHC RGDECRPRLV GFVDSEDVTV HDITLNQPAY WCLHLVRCDH SVIRNVSIYG
201: DFDTPNNDGI DIEGSNNTII TGCSIDTGDD AICPKSLTGP VHNLTVTNCR IRTKSSAIKF GSASSFNFER LLFDNITIVD SHRGLGMQIR DGGNVSNVVF
301: SNIKMRTRYY HPSWWGRAEP IYITTCPRYP GSKEGTISDV FFINISSVSE NGVFLAGSRH SLLRNLKFKN VDLTYRRWTN YTGGLYDYRP GCQELVKHKT
401: GGMMLEQISG LEIDNVRMRW SRGELKGWDV NPLLFRPSTI DRLSFHDWQS LNVQ

Best Arabidopsis Sequence Match ( AT3G57790.2 )
(BLAST)

001: MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J3I0]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.