Factsheet for TraesCS5A01G264400.2

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G271900.1	Wheat	extracellular, plasma membrane, vacuole	96.94	96.94
TraesCS5B01G263700.2	Wheat	extracellular, plasma membrane	95.84	94.81
HORVU5Hr1G073070.1	Barley	extracellular, plasma membrane, vacuole	95.4	93.97
Os09t0487600-01	Rice	extracellular	88.18	88.18
TraesCS3A01G393600.1	Wheat	extracellular	86.21	86.78
EER99085	Sorghum	extracellular, plasma membrane	87.09	86.15
Zm00001d020931_P001	Maize	extracellular	86.43	84.95
GSMUA_Achr3P11090_001	Banana	extracellular	70.46	69.4
Solyc03g051770.2.1	Tomato	cytosol	44.64	64.76
KRG95330	Soybean	extracellular, plasma membrane, vacuole	62.8	61.59
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	63.68	60.5
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	59.08	56.72
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	59.3	56.69
CDY02392	Canola	extracellular, plasma membrane, vacuole	59.3	56.69
CDY12962	Canola	extracellular, plasma membrane, vacuole	59.08	56.49
AT3G57790.1	Thale cress	extracellular, plasma membrane, vacuole	60.18	56.12
TraesCS6A01G340000.1	Wheat	mitochondrion	25.16	23.23
TraesCS7A01G323800.3	Wheat	plastid	24.51	23.09
TraesCS5A01G513600.1	Wheat	extracellular	22.54	22.84
TraesCS4A01G358700.1	Wheat	extracellular	22.32	22.72
TraesCS5A01G212900.1	Wheat	plastid	24.95	21.47
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	21.23	20.46
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	20.35	20.35
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	21.23	18.62
TraesCS7A01G019500.1	Wheat	cytosol	9.19	15.67
TraesCS7A01G019900.1	Wheat	cytosol	8.75	14.93
TraesCS7A01G019700.1	Wheat	cytosol	3.06	11.38

Protein Annotations

EnsemblPlants:TraesCS5A01G264400.2	EnsemblPlantsGene:TraesCS5A01G264400	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF10	PFAM:PF00295
SEG:seg	SignalP:SignalP-noTM	SMART:SM00710	SUPFAM:SSF51126	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr5A:-:476667744..476669854

Molecular Weight (calculated)

50017.4 Da

IEP (calculated)

7.224

GRAVY (calculated)

-0.156

Length

457 amino acids

Sequence
(BLAST)

001: MAAPPLLLLA ALLLLLPAAA RSAPARVFSV ADYGAAGDGS RYDTAAIQAA VDACAAAGGG RVLLPAPGDY LTATVRLRSR VVLEVAPGAR LLGGTRQRDY
101: PPEFRRWYVV LAENTTGAGV TGGGEINGQG GAFVVTPSAQ KNVMVSWNAT GDCLGDECRP RLVGFIDSKD VAVHDITLNQ PALWCLHLVR CDNSVIRNVS
201: IYGDFDTPNN DGIDIEDSNN TVITDCHIDT GDDAICPKSS TGPVYNLTAT NCWIRTKSCA IKFGSASFFN FEKLLFDNIT IVDSHRGLGM QIRDGGNVSD
301: VTFSNIKMRT RYYHPSWWGR AEPIYITTCP RHPDSKEGTI SDVRFINISS VSENGVFLAG SKHGLLRNLK FKNVELTYKR WTNYTGGLYD YRPGCRKMVK
401: HKTGGMMLEH ISGLEVDNVS MRWWRGSLEG WDVNPLLFRP STIDGLSFHD WQSLDVQ

Best Arabidopsis Sequence Match ( AT3G57790.2 )
(BLAST)

001: MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J3I0]
SUBAcon: [plasma membrane,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.