Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G264400.2 | Wheat | unclear | 93.97 | 95.4 |
| TraesCS5D01G271900.1 | Wheat | extracellular, plasma membrane, vacuole | 93.32 | 94.75 |
| TraesCS5B01G263700.2 | Wheat | extracellular, plasma membrane | 93.97 | 94.37 |
| Os09t0487600-01 | Rice | extracellular | 86.85 | 88.18 |
| HORVU3Hr1G088950.1 | Barley | extracellular | 85.99 | 87.89 |
| EER99085 | Sorghum | extracellular, plasma membrane | 84.48 | 84.85 |
| Zm00001d020931_P001 | Maize | extracellular | 84.27 | 84.09 |
| GSMUA_Achr3P11090_001 | Banana | extracellular | 68.75 | 68.75 |
| Solyc03g051770.2.1 | Tomato | cytosol | 44.18 | 65.08 |
| KRG95330 | Soybean | extracellular, plasma membrane, vacuole | 62.07 | 61.8 |
| VIT_08s0007g07880.t01 | Wine grape | extracellular, plasma membrane | 61.85 | 59.67 |
| PGSC0003DMT400033674 | Potato | extracellular, plasma membrane | 57.76 | 56.3 |
| Bra035299.1-P | Field mustard | extracellular, plasma membrane, vacuole | 57.54 | 55.86 |
| CDY02392 | Canola | extracellular, plasma membrane, vacuole | 57.54 | 55.86 |
| AT3G57790.1 | Thale cress | extracellular, plasma membrane, vacuole | 58.84 | 55.71 |
| CDY12962 | Canola | extracellular, plasma membrane, vacuole | 57.33 | 55.65 |
| HORVU5Hr1G117470.3 | Barley | extracellular | 21.12 | 20.59 |
| HORVU5Hr1G062220.2 | Barley | extracellular | 23.49 | 20.53 |
| HORVU3Hr1G054810.4 | Barley | extracellular | 22.63 | 19.41 |
| HORVU5Hr1G023800.7 | Barley | plastid | 20.69 | 18.71 |
| HORVU7Hr1G077560.12 | Barley | plastid | 17.24 | 16.56 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EMBL:AK357662 | EMBL:AK358653 | UniProt:F2D1A5 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0071555 |
| InterPro:Glyco_hydro_28 | EnsemblPlantsGene:HORVU5Hr1G073070 | EnsemblPlants:HORVU5Hr1G073070.1 | InterPro:IPR012334 | PFAM:PF00295 | PANTHER:PTHR31339 |
| PANTHER:PTHR31339:SF10 | InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 |
| SignalP:SignalP-noTM | UniParc:UPI00020050EE | SEG:seg | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D1A5]
Coordinates
chrchr5H:+:537900663..537905656
Molecular Weight (calculated)
50553.0 Da
IEP (calculated)
6.776
GRAVY (calculated)
-0.158
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAPPLLLL LAAAASLLLL LPPPAPAHSA PARVFSVADY GAAGDGTRYD TAAIQAAVDA CAGAGGGRVL LPAPGDYLTA TVHLRSRVVL EVAPGARLLG
101: GTRQRDYPPE RRRWYVVLAE NTTGAGVTGG GEVNGQGGAF VVTPSAQKNV MVSWNATGDC VGDECRPRLL GFIDSKDVAV HDITLNQPAL WCLHLVRCDN
201: SVIRNVSIYG DFDTPNNDGI DIEDSNNTVI TDCHIDTGDD AICPKSSTGP VYNLTATNCW IRTKSCAIKF GSASFFNFEK MLFDNITIVD SHRGLGMQIR
301: DGGNVSDVIF SNIKMRTRYY HPSWWGRAEP IYITTCPRHP DSREGTISDV RFINISSVSE NGVFLAGSKH GLLRNLKFQN VDLTYKRWTN YTGGLYDYRP
401: GCQEMVKHRT GGMMLEHISG LEVDNVSMRW SRGSLKGWDV NPLLFRPSTI DGLSFHDWQS LDVQ
101: GTRQRDYPPE RRRWYVVLAE NTTGAGVTGG GEVNGQGGAF VVTPSAQKNV MVSWNATGDC VGDECRPRLL GFIDSKDVAV HDITLNQPAL WCLHLVRCDN
201: SVIRNVSIYG DFDTPNNDGI DIEDSNNTVI TDCHIDTGDD AICPKSSTGP VYNLTATNCW IRTKSCAIKF GSASFFNFEK MLFDNITIVD SHRGLGMQIR
301: DGGNVSDVIF SNIKMRTRYY HPSWWGRAEP IYITTCPRHP DSREGTISDV RFINISSVSE NGVFLAGSKH GLLRNLKFQN VDLTYKRWTN YTGGLYDYRP
401: GCQEMVKHRT GGMMLEHISG LEVDNVSMRW SRGSLKGWDV NPLLFRPSTI DGLSFHDWQS LDVQ
001: MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J3I0]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.