Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G264400.2 | Wheat | unclear | 94.81 | 95.84 |
| TraesCS5D01G271900.1 | Wheat | extracellular, plasma membrane, vacuole | 93.51 | 94.53 |
| HORVU5Hr1G073070.1 | Barley | extracellular, plasma membrane, vacuole | 94.37 | 93.97 |
| Os09t0487600-01 | Rice | extracellular | 86.58 | 87.53 |
| EER99085 | Sorghum | extracellular, plasma membrane | 84.63 | 84.63 |
| Zm00001d020931_P001 | Maize | extracellular | 84.2 | 83.66 |
| GSMUA_Achr3P11090_001 | Banana | extracellular | 68.4 | 68.1 |
| Solyc03g051770.2.1 | Tomato | cytosol | 43.72 | 64.13 |
| KRG95330 | Soybean | extracellular, plasma membrane, vacuole | 61.47 | 60.94 |
| VIT_08s0007g07880.t01 | Wine grape | extracellular, plasma membrane | 62.12 | 59.67 |
| PGSC0003DMT400033674 | Potato | extracellular, plasma membrane | 57.79 | 56.09 |
| Bra035299.1-P | Field mustard | extracellular, plasma membrane, vacuole | 57.36 | 55.44 |
| CDY12962 | Canola | extracellular, plasma membrane, vacuole | 57.36 | 55.44 |
| CDY02392 | Canola | extracellular, plasma membrane, vacuole | 57.36 | 55.44 |
| AT3G57790.1 | Thale cress | extracellular, plasma membrane, vacuole | 58.44 | 55.1 |
| TraesCS3B01G253000.1 | Wheat | extracellular | 23.16 | 23.78 |
| TraesCS7B01G224700.1 | Wheat | plastid | 23.59 | 22.47 |
| TraesCS6B01G371200.2 | Wheat | mitochondrion | 24.03 | 22.42 |
| TraesCS5B01G097100.2 | Wheat | extracellular | 21.64 | 22.27 |
| TraesCS5B01G210900.1 | Wheat | plastid | 24.03 | 20.9 |
| TraesCS5B01G513100.1 | Wheat | extracellular | 21.21 | 20.59 |
| TraesCS4B01G344700.1 | Wheat | extracellular | 21.64 | 20.58 |
| TraesCS4B01G144700.2 | Wheat | extracellular, golgi, vacuole | 19.7 | 19.91 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016787 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 |
| PFAM:PF00295 | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF10 | InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence |
| SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-noTM | EnsemblPlantsGene:TraesCS5B01G263700 | EnsemblPlants:TraesCS5B01G263700.2 | SEG:seg |
Description
No Description!
Coordinates
chr5B:-:448130568..448132821
Molecular Weight (calculated)
50341.8 Da
IEP (calculated)
7.454
GRAVY (calculated)
-0.140
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVLLLAAAA SVLLLLPPPP PAAARSAAPA RVFSVADYGA AGDGSRYDTA AIQAAVDACA AAGGGRVLLP APGDYLTATV RLRSRVVLEV APGARLLGGT
101: RQRDYPPEFR RWYVVLAENT TGAGVTGGGE INGQGGAFVV TPSAQKNVMV SWNATGDCLG DECRPRLLGF IDSKDVAVHD ITLNQPAYWC LHLVRCDNSV
201: IRNVSIYGDF DTPNNDGIDI EDSNNTIIAD CHIDTGDDAI CPKSSTGPVY NLTATNCWIR TKSCAIKFGS ASFFNFEKLL FDNITIADSH RGLGMQIRNG
301: GNVSDVIFSN IKMRTRYYHP SWWGRAEPIY ITTCPRHPDS KEGTISDVRF INISSISENG VFLAGSKHGL LRNLKFQNVD LTYKRWTNYT GGLYDYRPGC
401: QKMVKHKTGG MMLEHISGLE VDNVSMRWWR GSLKGWDVNP LLFRPSTIDG LSFHDLQSLD VQ
101: RQRDYPPEFR RWYVVLAENT TGAGVTGGGE INGQGGAFVV TPSAQKNVMV SWNATGDCLG DECRPRLLGF IDSKDVAVHD ITLNQPAYWC LHLVRCDNSV
201: IRNVSIYGDF DTPNNDGIDI EDSNNTIIAD CHIDTGDDAI CPKSSTGPVY NLTATNCWIR TKSCAIKFGS ASFFNFEKLL FDNITIADSH RGLGMQIRNG
301: GNVSDVIFSN IKMRTRYYHP SWWGRAEPIY ITTCPRHPDS KEGTISDVRF INISSISENG VFLAGSKHGL LRNLKFQNVD LTYKRWTNYT GGLYDYRPGC
401: QKMVKHKTGG MMLEHISGLE VDNVSMRWWR GSLKGWDVNP LLFRPSTIDG LSFHDLQSLD VQ
001: MMGSILLLLL FFSLVQSRSD TSYSKIQLPG DSLTLSVTDF GATGDGINYD TSAIQSTIDA CNRHYTSFSS ICRVVFPSGN YLTAKLHLRS GVILDVTENA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA
101: VLLGGPRIED YYPAETSSDW YVVVANNATD VGITGGGAID GQGSKFVVRF DEKKNVMVSW NQTGACLGDE CRPRLVGFVD SINVEIWNIT LREPAYWCLH
201: IVRCENTSVH DVSILGDFNT PNNDGIDIED SNNTVITRCH IDTGDDAICP KTYTGPLYNL TATDCWIRTK SSAIKLGSAS WFDFKGLVFD NITIFESHRG
301: LGMQIRDGGN VSDVTFSNIN ISTRYYDPSW WGRAEPIYIT TCPRDSSAKE GSISNLLFVN ITIDSENGVF LSGSPNGLLS DIKFKNMNLT FRRWSNYSAG
401: LVDYRPGCQG LVNHRATSGI IMEHVNGFRV ENVDLKWSDD DDVNAAWNVP LEFRPSTVNN VSFVGFTSGL YTKLFESDYV MVGENNIAFA
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J3I0]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.