Factsheet for GSMUA_Achr2P08050_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, extracellular, cytosol

Predictor Summary:

nucleus 1
extracellular 1
plasma membrane 1
mitochondrion 2
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68976	Canola	extracellular	61.99	58.17
CDX75352	Canola	extracellular	61.76	57.84
Bra011440.1-P	Field mustard	extracellular	61.99	57.81
Os08t0107300-00	Rice	extracellular, mitochondrion	62.9	57.68
CDX72404	Canola	extracellular	61.09	57.08
KRH53903	Soybean	extracellular, plasma membrane, plastid	61.31	56.81
TraesCS7D01G320900.1	Wheat	plastid	61.99	56.49
TraesCS7A01G323800.3	Wheat	plastid	61.99	56.49
CDY46115	Canola	extracellular	60.18	56.24
AT4G33440.1	Thale cress	extracellular	60.18	56.0
TraesCS7B01G224700.1	Wheat	plastid	61.31	55.88
Bra037005.1-P	Field mustard	extracellular	59.95	55.56
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	21.95	55.11
KXG24195	Sorghum	endoplasmic reticulum, extracellular, plasma membrane, plastid	61.76	54.93
Zm00001d034990_P001	Maize	plasma membrane	60.86	54.56
Zm00001d021964_P001	Maize	cytosol	20.59	54.17
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	63.35	54.16
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	58.6	53.29
Solyc06g060170.2.1	Tomato	cytosol, golgi, plasma membrane	58.37	52.87
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	46.61	50.74
GSMUA_Achr10P...	Banana	cytosol	44.57	47.82
GSMUA_Achr6P14280_001	Banana	cytosol	43.44	47.76
GSMUA_Achr4P08470_001	Banana	extracellular	43.67	46.96
GSMUA_Achr8P19900_001	Banana	cytosol	43.89	46.75
GSMUA_Achr4P05580_001	Banana	cytosol	32.81	46.47
GSMUA_Achr8P06180_001	Banana	extracellular	40.95	46.06
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	43.89	45.97
GSMUA_AchrUn_...	Banana	extracellular	40.5	45.55
HORVU7Hr1G077560.12	Barley	plastid	48.64	44.51
GSMUA_Achr11P...	Banana	cytosol	31.0	43.91
GSMUA_Achr11P...	Banana	cytosol	29.86	43.28
GSMUA_Achr11P...	Banana	extracellular, vacuole	39.82	39.55
GSMUA_Achr11P...	Banana	extracellular	41.86	38.87
GSMUA_Achr3P10280_001	Banana	mitochondrion	40.95	37.79
GSMUA_Achr9P18190_001	Banana	mitochondrion	41.63	37.47
GSMUA_Achr5P22120_001	Banana	extracellular	41.63	37.4
GSMUA_Achr11P...	Banana	extracellular	44.8	36.07
GSMUA_Achr11P...	Banana	mitochondrion	39.82	35.85
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	39.82	35.27
GSMUA_Achr11P...	Banana	cytosol	42.76	28.55
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	9.73	21.39
GSMUA_Achr3P11090_001	Banana	extracellular	20.59	19.61

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	EnsemblPlantsGene:GSMUA_Achr2G08050_001	EnsemblPlants:GSMUA_Achr2P08050_001
EnsemblPlants:GSMUA_Achr2T08050_001	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0S646	PFAM:PF00295	PANTHER:PTHR31339
PANTHER:PTHR31339:SF4	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	UniParc:UPI00029572D4	SEG:seg

Description

Putative Probable polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr2G08050_001]

Coordinates

chr2:-:12209105..12211282

Molecular Weight (calculated)

48662.5 Da

IEP (calculated)

6.274

GRAVY (calculated)

-0.232

Length

442 amino acids

Sequence
(BLAST)

001: MDVQEKHPCL WRWHRWQDGL RRPSVVLLLG AIALLGWSSL QSTPAWVAVA PAAAPATAKD DVAVSGRRSC VEFYRPVGPR SVVFSIEEFG GVGDGRTSNT
101: EAFRRAVRRL GEFGDKGGAQ LNVPPGRWLT GSFNLTSNLT LFLEKDAIIL GSQDPEEWPV IEPLPSYGRG RERLGGRHIS LIHGEGLSDV IITGQNGSID
201: GQGKMWWDLW WNRTLKHTRG HLLELVNSEN ILISNLTFLN SPFWTIHPVY CSNVVLKNLT VLAPLHSPNT DGIDPDSSSH VCIEDCYIES GDDLVAVKSG
301: WDHYGIAMAH PSSNITDVGR GGYITDVTVT NVTMERVKIP IRFSRGSNDH PDEGWDPKAF PRVKGVRISN VVGFDVDKAP VLEGIEGAVY EDVCIRNFSL
401: SVTGREPKWH CEFVAGEAYD VSPSPCLQLS SNGSSSWCRH SS

Best Arabidopsis Sequence Match ( AT4G33440.1 )
(BLAST)

001: MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84K13]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.