Factsheet for GSMUA_Achr8P23620_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, golgi, extracellular

Predictor Summary:

nucleus 1
mitochondrion 3
extracellular 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53228	Canola	extracellular	16.03	71.43
GSMUA_Achr3P10280_001	Banana	mitochondrion	66.13	68.89
GSMUA_Achr9P18190_001	Banana	mitochondrion	67.54	68.64
GSMUA_Achr5P22120_001	Banana	extracellular	65.93	66.87
PGSC0003DMT400007594	Potato	extracellular	64.33	64.85
Solyc12g009210.1.1	Tomato	nucleus	64.13	64.65
Solyc07g042160.2.1	Tomato	nucleus	63.73	64.37
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	63.53	64.3
KRH19342	Soybean	endoplasmic reticulum	62.73	63.75
KRH02590	Soybean	extracellular, golgi, mitochondrion, plastid	62.53	63.41
AT3G42950.1	Thale cress	extracellular, golgi	60.72	62.6
AT1G19170.1	Thale cress	cytosol, extracellular, mitochondrion, peroxisome	63.13	62.25
KRH12568	Soybean	plastid	60.92	62.17
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	62.93	61.93
Solyc03g117750.2.1	Tomato	extracellular, golgi	60.32	61.81
PGSC0003DMT400036866	Potato	extracellular, golgi	60.32	61.81
CDX96676	Canola	extracellular, golgi, plastid	62.73	61.74
CDX83782	Canola	extracellular, golgi, plastid	62.73	61.74
GSMUA_Achr11P...	Banana	mitochondrion	60.72	61.71
CDY27797	Canola	extracellular, mitochondrion, plastid	61.72	61.48
Zm00001d052103_P001	Maize	plasma membrane	60.92	61.41
EES05901	Sorghum	extracellular, golgi	61.52	61.4
KRH37525	Soybean	extracellular, plasma membrane	60.72	61.34
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	61.52	61.16
CDY41934	Canola	extracellular, mitochondrion, plastid	61.32	60.96
KRH55874	Soybean	cytosol	8.02	60.61
Os02t0781000-01	Rice	extracellular	34.27	60.0
TraesCS6B01G371200.2	Wheat	mitochondrion	58.92	59.39
TraesCS6A01G340000.1	Wheat	mitochondrion	58.52	58.99
TraesCS6D01G320600.1	Wheat	mitochondrion	58.12	58.59
GSMUA_Achr8P19900_001	Banana	cytosol	39.28	47.23
GSMUA_Achr10P...	Banana	cytosol	38.48	46.6
GSMUA_Achr6P14280_001	Banana	cytosol	37.47	46.52
GSMUA_Achr4P08470_001	Banana	extracellular	38.28	46.47
GSMUA_AchrUn_...	Banana	extracellular	36.27	46.06
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	15.83	44.89
GSMUA_Achr8P06180_001	Banana	extracellular	35.07	44.53
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	36.07	44.34
GSMUA_Achr11P...	Banana	cytosol	26.65	42.63
GSMUA_Achr11P...	Banana	extracellular	39.28	41.18
GSMUA_Achr4P05580_001	Banana	cytosol	25.65	41.03
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	34.47	40.76
GSMUA_Achr11P...	Banana	cytosol	24.65	40.33
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	35.27	39.82
GSMUA_Achr11P...	Banana	extracellular, vacuole	31.86	35.73
GSMUA_Achr11P...	Banana	extracellular	34.67	31.51
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	11.42	28.36
GSMUA_Achr11P...	Banana	cytosol	34.27	25.83
GSMUA_Achr3P11090_001	Banana	extracellular	21.04	22.63

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr8G23620_001
EnsemblPlants:GSMUA_Achr8P23620_001	EnsemblPlants:GSMUA_Achr8T23620_001	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0TT15	PFAM:PF00295
PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI00029485F8	SEG:seg	:	:

Description

Putative Probable polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr8G23620_001]

Coordinates

chr8:+:28044972..28049450

Molecular Weight (calculated)

55566.1 Da

IEP (calculated)

8.938

GRAVY (calculated)

-0.034

Length

499 amino acids

Sequence
(BLAST)

001: MLEKHSSAGG KVQACQCRRR VVTFFSSPKA LFLVLWTLVF ASVFWWRTSY VDEVGFSLQL PRVRTGPMFR PVAFNLTDFG AVGDGETLNT DAFESAVAEI
101: AKLGERGGGQ LDVPAGLWLT APFNLTSHMT LFLAEGAVIL GVEKFVILVN NFLLSTKNSD ERYWPLLPPL PSYGYGREHK GPRYGSLIHG QNLKDVVITG
201: HNGTINGQGQ TWWTKYQKKL LNHTRGPLLQ LMWSRDVVIS NITLRDSPFW TLHPYDCKNV TISNLTILAP VSGAPNTDGI DPDSCEDVVI ENCYICTGDD
301: GIAIKSGWDQ YGIAYKRPSI NILIRNVTVR SVVSAGVSIG SEMSGGVSNV TVENLHVWES KRGLRIKTAA GRGGYVRNIF YRNVTLNHVS IGIVIKIDYN
401: EHADEFFDPK AIPTLESIHF NGIHGQNVDI PKKKKNIFRC SFVQGRIIGT IFPAPCANLD IYDGWGRLVK RSVRHREIEL FCCRISTKCM GLLFSALYM

Best Arabidopsis Sequence Match ( AT1G19170.1 )
(BLAST)

001: MVENLFPSRF QFHLQRLDPK RRLTSLLASH KTLFTFLWIT AFGSVFLWQR TAYIEGGSGT GPVGGKFTIF GKIKPIQPIP RLRPVVFDLK DFGGVGDGFT
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE17]
SUBAcon: [mitochondrion,peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.