Factsheet for PGSC0003DMT400036866

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 1
mitochondrion 3
extracellular 2
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g117750.2.1	Tomato	extracellular, golgi	96.92	96.92
GSMUA_Achr3P10280_001	Banana	mitochondrion	67.56	68.68
PGSC0003DMT400041391	Potato	cytosol	23.2	68.07
PGSC0003DMT400007594	Potato	extracellular	68.79	67.68
GSMUA_Achr9P18190_001	Banana	mitochondrion	68.17	67.62
GSMUA_Achr5P22120_001	Banana	extracellular	68.17	67.48
AT3G42950.1	Thale cress	extracellular, golgi	66.74	67.15
CDY53228	Canola	extracellular	15.2	66.07
GSMUA_Achr11P...	Banana	mitochondrion	66.12	65.58
CDY27797	Canola	extracellular, mitochondrion, plastid	66.74	64.87
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	66.53	64.54
CDY41934	Canola	extracellular, mitochondrion, plastid	66.32	64.34
Os02t0781000-01	Rice	extracellular	36.76	62.81
Zm00001d052103_P001	Maize	plasma membrane	62.22	61.21
EES05901	Sorghum	extracellular, golgi	62.63	61.0
TraesCS6B01G371200.2	Wheat	mitochondrion	61.6	60.61
TraesCS6A01G340000.1	Wheat	mitochondrion	61.4	60.4
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	61.81	60.32
TraesCS6D01G320600.1	Wheat	mitochondrion	60.99	60.0
KRH55874	Soybean	cytosol	8.01	59.09
PGSC0003DMT400031687	Potato	extracellular	41.68	45.41
PGSC0003DMT400081328	Potato	extracellular	37.78	40.09
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	39.84	39.92
PGSC0003DMT400018848	Potato	extracellular	37.37	39.82
PGSC0003DMT400024595	Potato	cytosol	38.19	38.99
PGSC0003DMT400055769	Potato	extracellular	37.99	38.78
PGSC0003DMT400032104	Potato	extracellular	37.17	37.47
PGSC0003DMT400000538	Potato	extracellular	35.93	36.84
PGSC0003DMT400094734	Potato	cytosol	5.75	26.67
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	21.77	22.27
PGSC0003DMT400065330	Potato	nucleus	5.95	14.15

Protein Annotations

EntrezGene:102592519	Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M1B4D8	PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG400014216	PGSC:PGSC0003DMG400014216
EnsemblPlants:PGSC0003DMT400036866	PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI00029511EA	RefSeq:XP_006341427.1	SEG:seg

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400014216]

Coordinates

chr3:-:57387670..57392525

Molecular Weight (calculated)

54793.2 Da

IEP (calculated)

9.550

GRAVY (calculated)

-0.211

Length

487 amino acids

Sequence
(BLAST)

001: MADPFKLQHR KLEYKRLIPS FLLSHRTLLT VLWIVGFILI VVWQRTAVER LLIYRGMASP TRPIPKLRPL VFNLSDFGAV GDGVTINTKA FEKAISEIRK
101: QGGGQLNVEP GHWLTAPFNL TSHMTLFLAE NAVILGIDDE SYWPLLPPLP SYGYGRERRG PRYGSLIHGQ NLKDVVITGH NGTINGQGRS WWEKYRKKLL
201: NHTRGPLLQL MWSRDIYISD VTFRDSPFWT LHPYDCQNVV IRNVTILAPL TEAPNTDGID PDSCVDMVIE DSYISVGDDG VAIKSGWDQY GIAYSRPSSN
301: ITIRNLIVRS MISAGVSIGS EMSGGVSNII VENLLIWNSK RGIRIKTSPG RGGHIRHVIY RNLTLQNVRV GLVIKTDYNE HPDEGYDPNA LPVIEDISFT
401: GIRGQGVRIP ARIYGSAEIP VQNITFQDMS VGITYKKKRI FQCSFVQGRV IGKIFPAPCE NLDWYDDGGK LIRQSTKKNT KDLDYDG

Best Arabidopsis Sequence Match ( AT1G19170.1 )
(BLAST)

001: MVENLFPSRF QFHLQRLDPK RRLTSLLASH KTLFTFLWIT AFGSVFLWQR TAYIEGGSGT GPVGGKFTIF GKIKPIQPIP RLRPVVFDLK DFGGVGDGFT
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE17]
SUBAcon: [mitochondrion,peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.