Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05901 | Sorghum | extracellular, golgi | 96.16 | 95.2 |
| Os02t0781000-01 | Rice | extracellular | 50.51 | 87.72 |
| TraesCS6B01G371200.2 | Wheat | mitochondrion | 85.45 | 85.45 |
| TraesCS6D01G320600.1 | Wheat | mitochondrion | 85.25 | 85.25 |
| TraesCS6A01G340000.1 | Wheat | mitochondrion | 85.05 | 85.05 |
| KRH19342 | Soybean | endoplasmic reticulum | 67.27 | 67.82 |
| KRH02590 | Soybean | extracellular, golgi, mitochondrion, plastid | 66.67 | 67.07 |
| VIT_11s0016g00720.t01 | Wine grape | extracellular, peroxisome, plastid | 66.67 | 66.94 |
| CDX83782 | Canola | extracellular, golgi, plastid | 68.08 | 66.47 |
| PGSC0003DMT400007594 | Potato | extracellular | 66.06 | 66.06 |
| Bra016521.1-P | Field mustard | extracellular, golgi, plastid | 67.47 | 65.88 |
| CDX96676 | Canola | extracellular, golgi, plastid | 67.47 | 65.88 |
| Solyc12g009210.1.1 | Tomato | nucleus | 65.66 | 65.66 |
| AT1G19170.1 | Thale cress | cytosol, extracellular, mitochondrion, peroxisome | 66.87 | 65.42 |
| AT3G42950.1 | Thale cress | extracellular, golgi | 63.43 | 64.88 |
| Solyc07g042160.2.1 | Tomato | nucleus | 64.65 | 64.78 |
| KRH12568 | Soybean | plastid | 63.03 | 63.8 |
| KRH37525 | Soybean | extracellular, plasma membrane | 63.64 | 63.77 |
| CDY27797 | Canola | extracellular, mitochondrion, plastid | 64.44 | 63.67 |
| KRH55874 | Soybean | cytosol | 8.48 | 63.64 |
| GSMUA_Achr11P... | Banana | mitochondrion | 63.03 | 63.54 |
| CDY41934 | Canola | extracellular, mitochondrion, plastid | 64.24 | 63.35 |
| Bra039462.1-P | Field mustard | extracellular, mitochondrion, plastid | 64.24 | 63.35 |
| Solyc03g117750.2.1 | Tomato | extracellular, golgi | 61.82 | 62.83 |
| CDY53228 | Canola | extracellular | 14.14 | 62.5 |
| PGSC0003DMT400036866 | Potato | extracellular, golgi | 61.21 | 62.22 |
| GSMUA_Achr8P23620_001 | Banana | extracellular, golgi, mitochondrion, plasma membrane | 61.41 | 60.92 |
| Zm00001d020615_P001 | Maize | plastid | 63.03 | 60.47 |
| Zm00001d053395_P001 | Maize | extracellular | 40.4 | 44.35 |
| Zm00001d011369_P001 | Maize | extracellular | 39.39 | 43.82 |
| Zm00001d018548_P001 | Maize | cytosol | 20.0 | 42.67 |
| Zm00001d009717_P001 | Maize | extracellular | 38.18 | 42.38 |
| Zm00001d027441_P001 | Maize | plasma membrane | 38.99 | 41.68 |
| Zm00001d023813_P001 | Maize | extracellular, vacuole | 37.78 | 40.56 |
| Zm00001d021964_P001 | Maize | cytosol | 13.54 | 39.88 |
| Zm00001d019282_P001 | Maize | mitochondrion | 40.81 | 39.76 |
| Zm00001d035899_P001 | Maize | extracellular | 38.99 | 39.71 |
| Zm00001d010681_P001 | Maize | cytosol | 22.63 | 39.58 |
| Zm00001d034990_P001 | Maize | plasma membrane | 38.79 | 38.95 |
| Zm00001d048696_P001 | Maize | extracellular | 37.78 | 37.85 |
| Zm00001d034727_P003 | Maize | plastid | 38.18 | 36.84 |
| Zm00001d020931_P001 | Maize | extracellular | 24.24 | 25.81 |
Protein Annotations
| EntrezGene:100272705 | Gene3D:2.160.20.10 | MapMan:50.3.2 | ProteinID:AQK56191.1 | UniProt:B4FQ16 | EMBL:BT039204 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0016798 | GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 |
| PFAM:PF00295 | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF21 | InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence |
| SMART:SM00710 | SUPFAM:SSF51126 | TMHMM:TMhelix | UniParc:UPI00017B78A6 | EnsemblPlantsGene:Zm00001d052103 | EnsemblPlants:Zm00001d052103_P001 |
| EnsemblPlants:Zm00001d052103_T001 | SEG:seg | : | : | : | : |
Description
Pectin lyase-like superfamily protein
Coordinates
chr4:+:179678569..179682211
Molecular Weight (calculated)
54117.7 Da
IEP (calculated)
9.149
GRAVY (calculated)
-0.130
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDTGGGRLY QRRGAVAFVA ANKALLAAAW VVGFALVFLW QSASMSFGSA GGGGYLRLLS VPPPPPRPAP RLRPTAYNIT DFGAVGDGRA VNTAAFERAV
101: EAIAALAERG GGQLNVPPGR WLTAPFNLTS HMTLFLAEGA EILGITDEKY WPLMPALPSY GYGRERKGPR FGSLIHGQNL RDVVITGHNG SINGQGEVWW
201: MKHRRRILNN TRPPLVQLMW SKDIIVANIT LRNSPFWHLH PYDCTNVTVS NVTIMSPVSG APNTDGIDPD SCQDVLIENC YISVGDDAIA IKSGWDQYGI
301: AYGRPSSDIL IRNVTARSLV SAGISIGSEM SGGVANVTVE NVRIWESRRG VRIKTATGRG GYIRNISYRN ITFDNVRAGI VIKVDYNEHA DDGYDRTAFP
401: DITSISFKGI HGQGVRVPVR AHGSDVIPIK DISFQDMSVG ISYKKKHIFQ CSYLEGRVIR PVFPKPCENL DVYDEQGQLV KRAVALNSTE LDYDI
101: EAIAALAERG GGQLNVPPGR WLTAPFNLTS HMTLFLAEGA EILGITDEKY WPLMPALPSY GYGRERKGPR FGSLIHGQNL RDVVITGHNG SINGQGEVWW
201: MKHRRRILNN TRPPLVQLMW SKDIIVANIT LRNSPFWHLH PYDCTNVTVS NVTIMSPVSG APNTDGIDPD SCQDVLIENC YISVGDDAIA IKSGWDQYGI
301: AYGRPSSDIL IRNVTARSLV SAGISIGSEM SGGVANVTVE NVRIWESRRG VRIKTATGRG GYIRNISYRN ITFDNVRAGI VIKVDYNEHA DDGYDRTAFP
401: DITSISFKGI HGQGVRVPVR AHGSDVIPIK DISFQDMSVG ISYKKKHIFQ CSYLEGRVIR PVFPKPCENL DVYDEQGQLV KRAVALNSTE LDYDI
001: MVENLFPSRF QFHLQRLDPK RRLTSLLASH KTLFTFLWIT AFGSVFLWQR TAYIEGGSGT GPVGGKFTIF GKIKPIQPIP RLRPVVFDLK DFGGVGDGFT
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE17]
SUBAcon: [mitochondrion,peroxisome,extracellular,cytosol]
SUBAcon: [mitochondrion,peroxisome,extracellular,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.