Factsheet for Zm00001d027441_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

plasma membrane: 23353019

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95599	Sorghum	extracellular	91.79	91.79
TraesCS5A01G513600.1	Wheat	extracellular	81.43	83.59
Os03t0124900-01	Rice	extracellular	82.29	83.19
TraesCS4B01G344700.1	Wheat	extracellular	82.07	78.19
Zm00001d018548_P001	Maize	cytosol	38.44	76.72
Zm00001d010681_P001	Maize	cytosol	46.0	75.27
CDY69951	Canola	cytosol	17.93	65.87
CDY10898	Canola	cytosol	7.13	64.71
PGSC0003DMT400094734	Potato	cytosol	14.47	63.81
Solyc01g094970.2.1	Tomato	extracellular	50.97	57.99
Solyc08g081480.2.1	Tomato	extracellular	59.83	57.35
PGSC0003DMT400032104	Potato	extracellular	59.83	57.35
PGSC0003DMT400055769	Potato	extracellular	58.75	57.02
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	58.96	56.99
VIT_02s0025g00260.t01	Wine grape	extracellular	58.75	56.67
KRH48075	Soybean	extracellular	58.75	56.43
CDY70893	Canola	cytosol	43.63	56.42
Solyc05g049980.2.1	Tomato	extracellular	59.18	56.38
CDY65355	Canola	extracellular	57.24	56.14
KRH48076	Soybean	extracellular	57.45	56.12
KRH41230	Soybean	nucleus	58.96	55.26
Zm00001d035899_P001	Maize	extracellular	57.88	55.14
Bra007609.1-P	Field mustard	extracellular	55.94	55.11
KRH59960	Soybean	nucleus	58.53	55.08
KRH06594	Soybean	mitochondrion	58.32	54.99
CDY48913	Canola	extracellular	55.94	54.99
PGSC0003DMT400000538	Potato	extracellular	56.37	54.95
KRH00832	Soybean	nucleus	57.02	54.55
KRH40394	Soybean	extracellular, nucleus	56.8	54.34
CDY69255	Canola	cytosol	44.06	54.26
AT4G23500.1	Thale cress	extracellular, plasma membrane	54.86	51.31
Bra019299.1-P	Field mustard	extracellular, plasma membrane	54.43	51.12
CDY44105	Canola	cytosol, nucleus, plasma membrane	49.89	51.11
Bra013697.1-P	Field mustard	extracellular, plasma membrane	54.0	50.71
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	18.36	48.3
Zm00001d009717_P001	Maize	extracellular	44.28	45.96
AT3G61490.4	Thale cress	cytosol, plastid	57.67	45.33
Zm00001d011369_P001	Maize	extracellular	42.76	44.49
Zm00001d019282_P001	Maize	mitochondrion	46.87	42.72
CDY10899	Canola	cytosol	8.86	42.71
Zm00001d034990_P001	Maize	plasma membrane	45.36	42.6
Zm00001d053395_P001	Maize	extracellular	41.04	42.13
Zm00001d021964_P001	Maize	cytosol	15.12	41.67
Zm00001d023813_P001	Maize	extracellular, vacuole	39.74	39.91
Zm00001d034727_P003	Maize	plastid	43.84	39.57
Zm00001d052103_P001	Maize	plasma membrane	41.68	38.99
Zm00001d048696_P001	Maize	extracellular	40.17	37.65
Zm00001d020615_P001	Maize	plastid	41.25	37.02
Solyc06g030520.1.1	Tomato	cytosol	7.34	29.82
KRH33610	Soybean	plastid	9.94	25.56
PGSC0003DMT400065330	Potato	nucleus	10.8	24.39
Zm00001d020931_P001	Maize	extracellular	22.68	22.58

Protein Annotations

EntrezGene:100284735	Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:B6TX01	EMBL:BT055169	EMBL:EU969516
GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798
GO:GO:0016829	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	ProteinID:ONL93151.1	PFAM:PF00295
PFscan:PS51257	PANTHER:PTHR31339	PANTHER:PTHR31339:SF39	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI000182D2C6	EnsemblPlantsGene:Zm00001d027441	EnsemblPlants:Zm00001d027441_P001
EnsemblPlants:Zm00001d027441_T001	SEG:seg	:	:	:	:

Description

Pectin lyase-like superfamily protein

Coordinates

chr1:+:5431259..5434466

Molecular Weight (calculated)

49738.2 Da

IEP (calculated)

6.589

GRAVY (calculated)

-0.124

Length

463 amino acids

Sequence
(BLAST)

001: MAPGRSLRPA GTAAVLWAAS LLLLATSCAR AGGAYAGPGC RKHVARVTEY GAVGDGRTLN TAAFARAVAD LARRAPDGGA ALVVPPGKWL TGPFNLTSCF
101: TLYLDEGAEI LASQDMKHWP LIAPLPSYGR GRDEPGPRYS NFIGGSNLTD VIITGKNGTI NGQGQVWWDK FHAKELKFTR GHLLELLYSD NIIISNVTFV
201: DAPYWNLHPT YCTNVTISGV TILAPVNSPN TDGIDPDSSS RVKIEDCYIV SGDDCVAVKS GWDEYGIRFN MPSQHIVIRR LTCVSPTSAM IALGSEMSGG
301: IRDVRAEDSV AINTESAVRV KSGAGRGGFV RDIFVRGLSL HTMKWVFWMT GNYGQHPDNT SDPNAMPEVT GINYSDVFAE NVTMAGRMEG IPKDPYTGIC
401: ISNVTARLAP DAKELQWNCT NVKGVTSHVS PKPCPELAAE GKPCAFPEEE LVIGPPELPK CSY

Best Arabidopsis Sequence Match ( AT3G48950.1 )
(BLAST)

001: MIRPTFGLLV FLAIFLFPAI ESRSHRNSVT SKIEFSALNC RKHSAILTDF GAVGDGKTSN TKAFRNAISK LSQMATDGGA QLVVPPGKWL TGSFNLTSHF
101: TLFIQRGATI LASQDESEWP VIAPLPSYGK GRDGTGTGRF NSLISGTNLT DVVITGNNGT INGQGQYWWD KFKKKQFKIT RPYLIEILFS KNIQISNITL
201: IDSPSWNIHP VYCNSVIVKS VTVLAPVTVP NTDGINPDSC TNTLIEDCYI VSGDDCIAVK SGWDQYGIKF GMPTQQLSIR RLTCISPKSA GVALGSEMSG
301: GIKDVRIEDV TLTNTESAIR IKTAVGRGAY VKDIYARRIT MKTMKYVFWM SGNYGSHPDE GFDPKALPEI TNINYRDMTA ENVTMSASLD GIDKDPFTGI
401: CISNVTIALA AKAKKMQWNC TDVAGVTSRV TPEPCSLLPE KKAQAKNVDC AFPSDLIPIE SVVLKKCFL

Arabidopsis Description

Endo-polygalacturonase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.