Factsheet for Bra019299.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70893	Canola	cytosol	72.41	99.72
CDY69255	Canola	cytosol	74.24	97.34
Bra013697.1-P	Field mustard	extracellular, plasma membrane	94.93	94.93
AT4G23500.1	Thale cress	extracellular, plasma membrane	93.51	93.13
PGSC0003DMT400032104	Potato	extracellular	67.75	69.15
Solyc08g081480.2.1	Tomato	extracellular	66.73	68.12
Bra018023.1-P	Field mustard	extracellular	60.65	63.75
Bra007609.1-P	Field mustard	extracellular	60.04	62.98
GSMUA_Achr4P05580_001	Banana	cytosol	39.76	62.82
Bra018004.1-P	Field mustard	cytosol	54.97	62.01
GSMUA_Achr11P...	Banana	cytosol	38.95	61.54
GSMUA_Achr11P...	Banana	cytosol	37.53	60.66
GSMUA_Achr11P...	Banana	extracellular	58.42	60.5
EER89047	Sorghum	extracellular, vacuole	59.43	59.19
Os06t0106800-01	Rice	extracellular	58.22	59.18
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	23.94	58.71
Zm00001d035899_P001	Maize	extracellular	57.81	58.64
TraesCS5A01G513600.1	Wheat	extracellular	52.54	57.43
Os03t0124900-01	Rice	extracellular	53.14	57.21
TraesCS7D01G016300.2	Wheat	extracellular	55.98	56.44
Zm00001d027441_P001	Maize	plasma membrane	51.12	54.43
EER95599	Sorghum	extracellular	50.91	54.21
TraesCS4B01G344700.1	Wheat	extracellular	52.54	53.29
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	55.78	52.78
TraesCS7A01G019900.1	Wheat	cytosol	28.6	52.61
TraesCSU01G066000.1	Wheat	golgi, unclear	55.78	52.28
TraesCS7A01G019500.1	Wheat	cytosol	28.19	51.87
Zm00001d018548_P001	Maize	cytosol	23.33	49.57
Zm00001d010681_P001	Maize	cytosol	27.38	47.7
Bra003485.1-P	Field mustard	extracellular, golgi	44.02	47.38
Bra007662.1-P	Field mustard	extracellular, plasma membrane	43.61	46.74
Bra013734.1-P	Field mustard	extracellular, vacuole	40.57	45.05
Bra011440.1-P	Field mustard	extracellular	43.2	44.94
Bra037005.1-P	Field mustard	extracellular	42.39	43.82
Bra037429.1-P	Field mustard	extracellular	39.15	43.47
Bra019264.1-P	Field mustard	extracellular, vacuole	39.15	42.79
Bra028511.1-P	Field mustard	extracellular	38.74	42.73
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	15.21	42.61
Bra001642.1-P	Field mustard	vacuole	38.54	42.13
Bra022182.1-P	Field mustard	extracellular, golgi	38.54	41.94
TraesCS7A01G019700.1	Wheat	cytosol	10.34	41.46
Bra001215.1-P	Field mustard	extracellular	37.53	41.2
Bra020656.1-P	Field mustard	extracellular, plasma membrane	38.95	40.85
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	38.13	37.45
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	37.73	36.69
Bra032138.1-P	Field mustard	cytosol	56.39	34.75
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	22.72	23.43
Bra007626.1-P	Field mustard	mitochondrion	23.33	19.79

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra019299	EnsemblPlants:Bra019299.1	EnsemblPlants:Bra019299.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4DS06	PFAM:PF00295	PFAM:PF12708
PANTHER:PTHR31339	PANTHER:PTHR31339:SF7	InterPro:Pectate_lyase_SF_prot	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI0002540EF0	SEG:seg	:	:	:

Description

AT4G23500 (E=4e-266) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA03:+:25099768..25103410

Molecular Weight (calculated)

54424.7 Da

IEP (calculated)

6.404

GRAVY (calculated)

-0.215

Length

493 amino acids

Sequence
(BLAST)

001: MRTFLSTVGF LLLLLLSHYG GLTGATDAEH SLRATDSHTH RHRRHHGHRR GEEFEYSALS CRAYSASLDE FGAVGDGVTS NTAAFRDAVS QLSRFADYGG
101: SLLFVPAGRW LTGSFNLTSH FTLFLHRDAV LLASQEESDY EVIEPLPSYG RGRDTDGGRF ISLLFGSNLT DVVITGENGT IDGQGEPWWG KFKRGELKYT
201: RPYLIEIMHS NGIQISNLTF LNSPSWHIHP VYSSNIVIQG LTILAPVTVP NTDGINPDSC TNTRIEDCYI VSGDDCIAVK SGWDQYGINY GMPTKQLLIR
301: RLTCISPDSA VIALGSEMSG GIEDVRAEDI VAINSESGIR IKTAVGRGGY VKDVYVRGMT MKTMKYVFWM TGSYGSHPDE HYDPKALPVI QNINYQDMVA
401: ENVTMPAQLA GITGDEFTGI CISNVTITLS KKPKKVLWNC TDVSGYTSGV TPEPCQLLPE KQPGTVVPCN FPESPIPIEE VKLQRCYTRR RHM

Best Arabidopsis Sequence Match ( AT4G23500.1 )
(BLAST)

001: MTSLSTAGYL LLLLLLPISY DGGFIGAADA EHDLRATDLH NHRHRRHRNH HRGEEFEYSA ISCRAYSASL DEFGAVGDGV TSNTAAFRDA VSQLSRFADY
101: GGSLLFVPAG RWLTGNFNLT SHFTLFLHRD AVILASQEES DYEVIEPLPS YGRGRDTDGG RFISLLFGSN LTDVVITGEN GTIDGQGEPW WGKFKRGELK
201: YTRPYLIEIM HSDGIQISNL TFLNSPSWHI HPVYSSNIYI QGLTILAPVT VPNTDGINPD SCTNTRIEDC YIVSGDDCIA VKSGWDQYGI NYGMPTKQLL
301: IRRLTCISPD SAVIALGSEM SGGIEDVRAE DIVAINSESG IRIKTAIGRG GYVKDVYVRG MTMMTMKYVF WMTGSYGSHP DDHYDPKALP VIQNINYQDM
401: VAENVTMPAQ LAGISGDQFT GICISNVTIT LSKKPKKVLW NCTDVSGYTS GVTPQPCQLL PEKQPGTVVP CNFPEDPIPI DEVKLQRCYS RRRNM

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O81746]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.