Factsheet for GSMUA_Achr11P02850_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
nucleus 1
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	93.11	91.03
GSMUA_Achr4P05580_001	Banana	cytosol	68.85	67.31
GSMUA_Achr11P...	Banana	extracellular	91.8	58.82
CDY10899	Canola	cytosol	16.39	52.08
CDY70893	Canola	cytosol	60.0	51.12
PGSC0003DMT400094734	Potato	cytosol	17.05	49.52
CDY69255	Canola	cytosol	60.0	48.67
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	30.82	46.77
KRH59960	Soybean	nucleus	65.9	40.85
CDY44105	Canola	cytosol, nucleus, plasma membrane	60.33	40.71
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	63.61	40.5
KRH41230	Soybean	nucleus	65.25	40.28
PGSC0003DMT400055769	Potato	extracellular	62.95	40.25
VIT_02s0025g00260.t01	Wine grape	extracellular	62.95	40.0
Solyc08g081480.2.1	Tomato	extracellular	62.95	39.75
CDY69951	Canola	cytosol	16.39	39.68
KRH00832	Soybean	nucleus	62.62	39.46
KRH48075	Soybean	extracellular	62.3	39.42
CDY65355	Canola	extracellular	60.98	39.41
Bra007609.1-P	Field mustard	extracellular	60.66	39.36
Solyc05g049980.2.1	Tomato	extracellular	62.62	39.3
KRH40394	Soybean	extracellular, nucleus	62.3	39.26
KRH48076	Soybean	extracellular	60.98	39.24
CDY10898	Canola	cytosol	6.56	39.22
PGSC0003DMT400032104	Potato	extracellular	61.97	39.13
CDY48913	Canola	extracellular	60.33	39.07
PGSC0003DMT400000538	Potato	extracellular	60.66	38.95
Solyc01g094970.2.1	Tomato	extracellular	51.8	38.82
AT4G23500.1	Thale cress	extracellular, plasma membrane	61.97	38.18
KRH06594	Soybean	mitochondrion	61.31	38.09
Bra013697.1-P	Field mustard	extracellular, plasma membrane	60.66	37.53
Bra019299.1-P	Field mustard	extracellular, plasma membrane	60.66	37.53
GSMUA_Achr8P06180_001	Banana	extracellular	47.21	36.64
GSMUA_AchrUn_...	Banana	extracellular	46.56	36.13
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	44.92	33.74
GSMUA_Achr4P08470_001	Banana	extracellular	43.93	32.6
AT3G61490.4	Thale cress	cytosol, plastid	61.64	31.92
GSMUA_Achr8P19900_001	Banana	cytosol	43.28	31.81
GSMUA_Achr6P14280_001	Banana	cytosol	41.64	31.59
GSMUA_Achr10P...	Banana	cytosol	41.97	31.07
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	43.28	29.86
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	41.31	29.86
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	16.39	28.41
GSMUA_Achr11P...	Banana	extracellular, vacuole	39.67	27.19
Solyc06g030520.1.1	Tomato	cytosol	9.84	26.32
GSMUA_Achr3P10280_001	Banana	mitochondrion	40.66	25.89
GSMUA_Achr9P18190_001	Banana	mitochondrion	40.66	25.25
PGSC0003DMT400065330	Potato	nucleus	16.72	24.88
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	40.33	24.65
GSMUA_Achr11P...	Banana	mitochondrion	39.34	24.44
GSMUA_Achr5P22120_001	Banana	extracellular	38.36	23.78
GSMUA_Achr11P...	Banana	extracellular	40.66	22.59
GSMUA_Achr11P...	Banana	cytosol	40.0	18.43
KRH33610	Soybean	plastid	8.52	14.44
GSMUA_Achr3P11090_001	Banana	extracellular	19.34	12.72

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	EnsemblPlantsGene:GSMUA_Achr11G02850_001	EnsemblPlants:GSMUA_Achr11P02850_001
EnsemblPlants:GSMUA_Achr11T02850_001	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0RNW5	PFAM:PF00295	PANTHER:PTHR31339
PANTHER:PTHR31339:SF7	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	UniParc:UPI000295F436	SEG:seg

Description

Probable polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr11G02850_001]

Coordinates

chr11:+:2049389..2050945

Molecular Weight (calculated)

33836.2 Da

IEP (calculated)

4.745

GRAVY (calculated)

-0.128

Length

305 amino acids

Sequence
(BLAST)

001: MLVQDINEWS IIDSLPSYGR GRDTTGGRYS NFIMGYNLTD VVITGNNGTI DGQGETWWKM FRNKELNYTR GYLIELVYCM QVLISNITLV DAPSWNIHPV
101: YSSQVIVSGI TILAPVNSPN TDGINPDSSS NVRIEDCYIV SGDDCVAIKS GWDEIKTAIG RGAYVKDIFV RRMDLHTMKW VFWMTGTYGQ HPDDKFDPKA
201: IPVVQNISYS NVVAENVTMA AKLEGIPGAP FTGICIYNVT AEVRKSKKPI WNCTDVEGVS SHVTPTPCAL IPESPDSITH CPFPEDVLPV DFVGLTECSY
301: QRTKA

Best Arabidopsis Sequence Match ( AT3G61490.1 )
(BLAST)

001: MKNILACIVT IITLSNLITI SQGRRVSQSF ETFEYTAIIC RSHSASITEY GGVGDGKTLN TKAFQSAVDH LSQYSSEGGA QLFVPAGKWL TGSFNLTSHF
101: TLFLHKDAIL LAAQDLNEYP ILKALPSYGR GRDAAGGRFA SLIFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR PYLIELMFSD TIQISNLTFL
201: DSPSWNIHPV YSSNIIVKGV TIIAPVKSPN TDGINPDSCT NTRIEDCYII SGDDCIAVKS GWDEYGISFG MPTKHLVIRR LTCISPYSAA IALGSEMSGG
301: IEDVRAEDIT AYQTESGVRI KTAVGRGAFV KNIYVKGMNL HTMKWVFWMT GNYKAHADSH YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFTGIC
401: ISNATISMAA KHKKAIWMCS DVEGVTSGVD PKPCDLLDGQ ESETTKKKMI DGGCDFPTDV LEIDNVELKT CSYQMS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.