Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plasma membrane 1
- extracellular 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P27460_001 | Banana | extracellular, plastid | 63.81 | 33.33 |
| Solyc01g094970.2.1 | Tomato | extracellular | 95.24 | 24.57 |
| PGSC0003DMT400000538 | Potato | extracellular | 98.1 | 21.68 |
| TraesCS7A01G019900.1 | Wheat | cytosol | 55.24 | 21.64 |
| TraesCS7A01G019500.1 | Wheat | cytosol | 53.33 | 20.9 |
| PGSC0003DMT400065330 | Potato | nucleus | 39.05 | 20.0 |
| PGSC0003DMT400055769 | Potato | extracellular | 85.71 | 18.87 |
| TraesCS7A01G019700.1 | Wheat | cytosol | 21.9 | 18.7 |
| PGSC0003DMT400041391 | Potato | cytosol | 29.52 | 18.67 |
| KRH48075 | Soybean | extracellular | 80.95 | 17.63 |
| KRH48076 | Soybean | extracellular | 77.14 | 17.09 |
| GSMUA_Achr11P... | Banana | cytosol | 49.52 | 17.05 |
| CDY65355 | Canola | extracellular | 76.19 | 16.95 |
| KRH06594 | Soybean | mitochondrion | 79.05 | 16.9 |
| KRH00832 | Soybean | nucleus | 77.14 | 16.74 |
| KRH40394 | Soybean | extracellular, nucleus | 77.14 | 16.74 |
| VIT_15s0046g02000.t01 | Wine grape | extracellular, vacuole | 76.19 | 16.7 |
| GSMUA_Achr11P... | Banana | cytosol | 49.52 | 16.67 |
| Bra007609.1-P | Field mustard | extracellular | 74.29 | 16.6 |
| CDY48913 | Canola | extracellular | 74.29 | 16.56 |
| TraesCS5A01G513600.1 | Wheat | extracellular | 69.52 | 16.19 |
| Os03t0124900-01 | Rice | extracellular | 68.57 | 15.72 |
| GSMUA_Achr4P05580_001 | Banana | cytosol | 45.71 | 15.38 |
| PGSC0003DMT400032104 | Potato | extracellular | 70.48 | 15.32 |
| GSMUA_Achr11P... | Banana | extracellular | 67.62 | 14.92 |
| TraesCS4B01G344700.1 | Wheat | extracellular | 68.57 | 14.81 |
| Zm00001d027441_P001 | Maize | plasma membrane | 63.81 | 14.47 |
| EER95599 | Sorghum | extracellular | 63.81 | 14.47 |
| PGSC0003DMT400024595 | Potato | cytosol | 64.76 | 14.26 |
| AT3G61490.4 | Thale cress | cytosol, plastid | 79.05 | 14.09 |
| EER89047 | Sorghum | extracellular, vacuole | 62.86 | 13.33 |
| Os06t0106800-01 | Rice | extracellular | 60.0 | 12.99 |
| Zm00001d035899_P001 | Maize | extracellular | 59.05 | 12.76 |
| TraesCS7D01G016300.2 | Wheat | extracellular | 57.14 | 12.27 |
| TraesCSU01G066000.1 | Wheat | golgi, unclear | 58.1 | 11.6 |
| TraesCS7A01G019400.1 | Wheat | extracellular, plastid, vacuole | 57.14 | 11.52 |
| Zm00001d010681_P001 | Maize | cytosol | 26.67 | 9.89 |
| Zm00001d018548_P001 | Maize | cytosol | 20.95 | 9.48 |
| PGSC0003DMT400018848 | Potato | extracellular | 40.95 | 9.41 |
| PGSC0003DMT400031687 | Potato | extracellular | 36.19 | 8.5 |
| PGSC0003DMT400081328 | Potato | extracellular | 37.14 | 8.5 |
| PGSC0003DMT400030711 | Potato | extracellular, golgi, nucleus | 36.19 | 7.82 |
| PGSC0003DMT400007594 | Potato | extracellular | 31.43 | 6.67 |
| PGSC0003DMT400036866 | Potato | extracellular, golgi | 26.67 | 5.75 |
| PGSC0003DMT400033674 | Potato | extracellular, plasma membrane | 14.29 | 3.15 |
| GSMUA_Achr7P24560_001 | Banana | cytosol, nucleus, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400094734 | EnsemblPlantsGene:PGSC0003DMG400044305 | Gene3D:2.160.20.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0016798 | InterPro:Glyco_hydro_28 |
| InterPro:IPR012334 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF12 | PFAM:PF00295 |
| PGSC:PGSC0003DMG400044305 | SUPFAM:SSF51126 | UniParc:UPI0002955D4B | UniProt:M1DUS1 | MapMan:35.1 | : |
Description
Glycoside hydrolase family 28 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400044305]
Coordinates
chr8:-:24915315..24915632
Molecular Weight (calculated)
11604.1 Da
IEP (calculated)
7.604
GRAVY (calculated)
-0.168
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGIQDVRI QDITAIQTES GIRIKTGVGR GGYVKDIYVK GMKLHTMKWV FWMTGNYGSH AETHWDPKAL PEIKGINYRD VVAENVSMAG QLDGISGDPF
101: TIICM
101: TIICM
001: MKNILACIVT IITLSNLITI SQGRRVSQSF ETFEYTAIIC RSHSASITEY GGVGDGKTLN TKAFQSAVDH LSQYSSEGGA QLFVPAGKWL TGSFNLTSHF
101: TLFLHKDAIL LAAQDLNEYP ILKALPSYGR GRDAAGGRFA SLIFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR PYLIELMFSD TIQISNLTFL
201: DSPSWNIHPV YSSNIIVKGV TIIAPVKSPN TDGINPDSCT NTRIEDCYII SGDDCIAVKS GWDEYGISFG MPTKHLVIRR LTCISPYSAA IALGSEMSGG
301: IEDVRAEDIT AYQTESGVRI KTAVGRGAFV KNIYVKGMNL HTMKWVFWMT GNYKAHADSH YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFTGIC
401: ISNATISMAA KHKKAIWMCS DVEGVTSGVD PKPCDLLDGQ ESETTKKKMI DGGCDFPTDV LEIDNVELKT CSYQMS
101: TLFLHKDAIL LAAQDLNEYP ILKALPSYGR GRDAAGGRFA SLIFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR PYLIELMFSD TIQISNLTFL
201: DSPSWNIHPV YSSNIIVKGV TIIAPVKSPN TDGINPDSCT NTRIEDCYII SGDDCIAVKS GWDEYGISFG MPTKHLVIRR LTCISPYSAA IALGSEMSGG
301: IEDVRAEDIT AYQTESGVRI KTAVGRGAFV KNIYVKGMNL HTMKWVFWMT GNYKAHADSH YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFTGIC
401: ISNATISMAA KHKKAIWMCS DVEGVTSGVD PKPCDLLDGQ ESETTKKKMI DGGCDFPTDV LEIDNVELKT CSYQMS
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.