Factsheet for Zm00001d018548_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010681_P001	Maize	cytosol	88.79	72.79
CDY69951	Canola	cytosol	26.29	48.41
CDY10898	Canola	cytosol	9.91	45.1
Zm00001d027441_P001	Maize	plasma membrane	76.72	38.44
EER95599	Sorghum	extracellular	72.84	36.5
TraesCS5A01G513600.1	Wheat	extracellular	66.81	34.37
Os03t0124900-01	Rice	extracellular	66.38	33.62
TraesCS4B01G344700.1	Wheat	extracellular	68.53	32.72
CDY70893	Canola	cytosol	47.84	31.01
CDY69255	Canola	cytosol	47.84	29.52
Solyc01g094970.2.1	Tomato	extracellular	51.72	29.48
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	21.55	28.41
Solyc08g081480.2.1	Tomato	extracellular	55.17	26.5
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	54.31	26.3
KRH48075	Soybean	extracellular	54.31	26.14
KRH48076	Soybean	extracellular	53.02	25.95
VIT_02s0025g00260.t01	Wine grape	extracellular	53.45	25.83
PGSC0003DMT400055769	Potato	extracellular	53.02	25.79
KRH41230	Soybean	nucleus	54.74	25.71
PGSC0003DMT400032104	Potato	extracellular	53.45	25.67
Solyc05g049980.2.1	Tomato	extracellular	53.45	25.51
KRH59960	Soybean	nucleus	53.88	25.41
Zm00001d035899_P001	Maize	extracellular	53.02	25.31
PGSC0003DMT400000538	Potato	extracellular	51.29	25.05
KRH06594	Soybean	mitochondrion	53.02	25.05
KRH40394	Soybean	extracellular, nucleus	52.16	25.0
KRH00832	Soybean	nucleus	52.16	25.0
CDY65355	Canola	extracellular	50.86	25.0
CDY44105	Canola	cytosol, nucleus, plasma membrane	48.28	24.78
Bra007609.1-P	Field mustard	extracellular	50.0	24.68
CDY48913	Canola	extracellular	50.0	24.63
Zm00001d021964_P001	Maize	cytosol	17.67	24.4
Zm00001d009717_P001	Maize	extracellular	45.26	23.54
AT4G23500.1	Thale cress	extracellular, plasma membrane	50.0	23.43
Bra019299.1-P	Field mustard	extracellular, plasma membrane	49.57	23.33
Bra013697.1-P	Field mustard	extracellular, plasma membrane	49.14	23.12
Zm00001d053395_P001	Maize	extracellular	43.1	22.17
Zm00001d019282_P001	Maize	mitochondrion	48.28	22.05
Zm00001d011369_P001	Maize	extracellular	41.81	21.8
Zm00001d034727_P003	Maize	plastid	47.84	21.64
Zm00001d034990_P001	Maize	plasma membrane	45.69	21.5
PGSC0003DMT400094734	Potato	cytosol	9.48	20.95
AT3G61490.4	Thale cress	cytosol, plastid	52.59	20.71
Zm00001d052103_P001	Maize	plasma membrane	42.67	20.0
Zm00001d020615_P001	Maize	plastid	44.4	19.96
Zm00001d023813_P001	Maize	extracellular, vacuole	39.66	19.96
Zm00001d048696_P001	Maize	extracellular	40.95	19.23
KRH33610	Soybean	plastid	8.62	11.11
Zm00001d020931_P001	Maize	extracellular	21.55	10.75
Solyc06g030520.1.1	Tomato	cytosol	1.72	3.51
PGSC0003DMT400065330	Potato	nucleus	1.72	1.95
CDY10899	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A1D6HQ99	ProteinID:AQK76449.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
GO:GO:0016829	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF39
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	UniParc:UPI000845560E	EnsemblPlantsGene:Zm00001d018548	EnsemblPlants:Zm00001d018548_P001
EnsemblPlants:Zm00001d018548_T001	:	:	:	:	:

Description

Pectin lyase-like superfamily protein

Coordinates

chr5:-:222778069..222780034

Molecular Weight (calculated)

25609.0 Da

IEP (calculated)

4.711

GRAVY (calculated)

-0.278

Length

232 amino acids

Sequence
(BLAST)

001: MAYGDRVTTF EDSEKESEYG YVRKDMKHWP LIAPLSSYGR GRDEPGPRYN NFIGGSNLTD VIITGKNGTI NGQGQVWWDK FHAKELKFIR GHLLELLYSD
101: NIIISNVTFV NAPYWNLHPT YCTNVTISGV TIPAPVNSPN TDGIGPESSS RVKVEDCYII SSDDCVAVKS GWDEYDISEM SDDICDVRAE DSVAINTESG
201: IRVKTLGAIA GVLLSNELVA AALFTHAINH KQ

Best Arabidopsis Sequence Match ( AT3G61490.1 )
(BLAST)

001: MKNILACIVT IITLSNLITI SQGRRVSQSF ETFEYTAIIC RSHSASITEY GGVGDGKTLN TKAFQSAVDH LSQYSSEGGA QLFVPAGKWL TGSFNLTSHF
101: TLFLHKDAIL LAAQDLNEYP ILKALPSYGR GRDAAGGRFA SLIFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR PYLIELMFSD TIQISNLTFL
201: DSPSWNIHPV YSSNIIVKGV TIIAPVKSPN TDGINPDSCT NTRIEDCYII SGDDCIAVKS GWDEYGISFG MPTKHLVIRR LTCISPYSAA IALGSEMSGG
301: IEDVRAEDIT AYQTESGVRI KTAVGRGAFV KNIYVKGMNL HTMKWVFWMT GNYKAHADSH YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFTGIC
401: ISNATISMAA KHKKAIWMCS DVEGVTSGVD PKPCDLLDGQ ESETTKKKMI DGGCDFPTDV LEIDNVELKT CSYQMS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.