Factsheet for Zm00001d021964_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034990_P001	Maize	plasma membrane	72.62	24.75
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	54.17	20.59
CDX68976	Canola	extracellular	52.38	18.68
CDX75352	Canola	extracellular	52.38	18.64
Bra011440.1-P	Field mustard	extracellular	52.38	18.57
CDY46115	Canola	extracellular	51.79	18.39
AT4G33440.1	Thale cress	extracellular	51.79	18.32
Bra037005.1-P	Field mustard	extracellular	51.79	18.24
CDX72404	Canola	extracellular	50.0	17.76
Zm00001d018548_P001	Maize	cytosol	24.4	17.67
KRH53903	Soybean	extracellular, plasma membrane, plastid	48.81	17.19
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	47.62	16.46
Zm00001d011369_P001	Maize	extracellular	43.45	16.4
Solyc06g060170.2.1	Tomato	cytosol, golgi, plasma membrane	47.62	16.39
Zm00001d009717_P001	Maize	extracellular	43.45	16.37
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	48.21	15.67
Zm00001d027441_P001	Maize	plasma membrane	41.67	15.12
Zm00001d035899_P001	Maize	extracellular	42.26	14.61
Zm00001d053395_P001	Maize	extracellular	38.1	14.19
Zm00001d023813_P001	Maize	extracellular, vacuole	38.1	13.88
Zm00001d010681_P001	Maize	cytosol	23.21	13.78
Zm00001d019282_P001	Maize	mitochondrion	41.07	13.58
Zm00001d052103_P001	Maize	plasma membrane	39.88	13.54
Zm00001d020615_P001	Maize	plastid	40.48	13.18
Zm00001d034727_P003	Maize	plastid	39.88	13.06
Zm00001d048696_P001	Maize	extracellular	37.5	12.75
Zm00001d020931_P001	Maize	extracellular	23.81	8.6

Protein Annotations

EnsemblPlants:Zm00001d021964_P001	EnsemblPlants:Zm00001d021964_T001	EnsemblPlantsGene:Zm00001d021964	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0016829	InterPro:IPR012334	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF4
ProteinID:ONM59170.1	SEG:seg	SUPFAM:SSF51126	UniParc:UPI0008446817	UniProt:A0A1D6II56	MapMan:35.2

Description

Pectin lyase-like superfamily protein

Coordinates

chr7:-:167208857..167210578

Molecular Weight (calculated)

17669.8 Da

IEP (calculated)

9.013

GRAVY (calculated)

-0.268

Length

168 amino acids

Sequence
(BLAST)

001: MGFYAGTGPT REVWASVEEF GAVGDGATPN TAAFRRAVAE LGARAAGGGG ARLDVPPGGG SRAASTSPAA SPSSCIATRS SSAPRSRYCR SVVQYCRVII
101: SPLCGRERLG PRHISLIHGE GLNDVVITGS NGTIDGQGHM WWELWRNRTL NHTRGHLIEL VNSNNGIE

Best Arabidopsis Sequence Match ( AT4G33440.1 )
(BLAST)

001: MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84K13]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.