Factsheet for Zm00001d023813_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0554800-01	Rice	cytosol, extracellular	73.32	79.72
TraesCS5D01G102900.1	Wheat	unclear	74.19	76.17
TraesCS5B01G097100.2	Wheat	extracellular	73.54	75.5
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	74.19	72.15
HORVU5Hr1G023800.7	Barley	plastid	75.05	67.45
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	61.61	67.3
Zm00001d048696_P001	Maize	extracellular	70.72	65.99
AT3G16850.1	Thale cress	vacuole	57.05	57.8
KRH37050	Soybean	extracellular, vacuole	56.62	57.74
GSMUA_Achr11P...	Banana	extracellular, vacuole	55.31	57.3
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	56.4	57.14
CDX95899	Canola	extracellular	55.31	56.29
VIT_07s0005g00890.t01	Wine grape	extracellular	57.92	55.97
KRH31843	Soybean	extracellular	55.31	55.92
CDY33922	Canola	extracellular	53.8	55.86
Bra022182.1-P	Field mustard	extracellular, golgi	54.88	55.85
KRH69264	Soybean	extracellular	55.1	55.82
CDY54633	Canola	extracellular	54.23	55.8
KRH50791	Soybean	extracellular	54.23	55.68
KRH12027	Soybean	extracellular, vacuole	56.83	55.63
CDX92101	Canola	extracellular, golgi	54.66	55.38
KRH02302	Soybean	extracellular	53.8	55.23
CDX82390	Canola	extracellular	53.58	55.01
Bra001642.1-P	Field mustard	vacuole	53.58	54.77
CDX74085	Canola	cytoskeleton, cytosol, vacuole	44.9	54.47
CDY08036	Canola	cytosol, nucleus, vacuole	44.25	54.11
Bra037429.1-P	Field mustard	extracellular	52.06	54.05
AT5G49215.1	Thale cress	extracellular, vacuole	52.49	53.9
Solyc06g009790.2.1	Tomato	extracellular	53.15	53.61
KRG96478	Soybean	endoplasmic reticulum, extracellular	55.75	53.32
AT3G06770.5	Thale cress	extracellular	51.63	53.24
GSMUA_Achr11P...	Banana	extracellular	63.34	53.19
PGSC0003DMT400018848	Potato	extracellular	52.71	53.17
PGSC0003DMT400081328	Potato	extracellular	52.93	53.16
Bra020656.1-P	Field mustard	extracellular, plasma membrane	53.58	52.55
Bra001215.1-P	Field mustard	extracellular	50.98	52.34
KRH68221	Soybean	extracellular	56.4	52.31
CDY56436	Canola	extracellular, vacuole	52.71	51.27
CDY05643	Canola	extracellular, plasma membrane, plastid	53.15	51.26
Solyc09g075460.2.1	Tomato	extracellular	53.15	51.04
VIT_05s0077g01740.t01	Wine grape	nucleus	25.81	50.42
CDX86247	Canola	plasma membrane, plastid	52.71	48.5
Zm00001d011369_P001	Maize	extracellular	44.25	45.84
Zm00001d034727_P003	Maize	plastid	50.54	45.42
Zm00001d019282_P001	Maize	mitochondrion	48.37	43.9
Zm00001d053395_P001	Maize	extracellular	42.73	43.68
Zm00001d009717_P001	Maize	extracellular	41.43	42.83
GSMUA_Achr11P...	Banana	cytosol	59.65	41.54
Zm00001d035899_P001	Maize	extracellular	42.95	40.74
Zm00001d034990_P001	Maize	plasma membrane	43.38	40.57
Zm00001d027441_P001	Maize	plasma membrane	39.91	39.74
Zm00001d018548_P001	Maize	cytosol	19.96	39.66
Zm00001d010681_P001	Maize	cytosol	23.43	38.16
Zm00001d021964_P001	Maize	cytosol	13.88	38.1
Zm00001d052103_P001	Maize	plasma membrane	40.56	37.78
Zm00001d020615_P001	Maize	plastid	39.05	34.88
Zm00001d020931_P001	Maize	extracellular	23.43	23.23

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A1D6IW31	ProteinID:AQK40152.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF11	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0008432286	EnsemblPlantsGene:Zm00001d023813	EnsemblPlants:Zm00001d023813_P001
EnsemblPlants:Zm00001d023813_T001	SEG:seg	:	:	:	:

Description

Polygalacturonase

Coordinates

chr10:-:22948296..22951424

Molecular Weight (calculated)

49313.2 Da

IEP (calculated)

5.291

GRAVY (calculated)

0.079

Length

461 amino acids

Sequence
(BLAST)

001: MAPCWLQVAL ASMVAVLVLG LACAEAEPQC TRRRPPAPPR PHSVTITEFG AVGDGVTLNT VSFQNAVFYL RSFADKGGAQ LYIPRGRWLT GSFNLTSHLT
101: LFLESGAVIV GTQDVSQWPV VEPLPSYGRG MDLPGSRHRS LINGQNLVDV VITGNNGTID GQGSTWWNWF RSNKLNYSRP HLVEFVDSEQ IVISNITFLN
201: SPAWSIHPVY CSNVVVHSVT IQTSLDAPLN HGIVPDSCSN MCIEDSSISV SHDAISLKSG WDKQGIAFGR PTSDIHISRL DLQSSLGAAL AFGSEMSGGI
301: SDIHADRLLI HSSSRGVFFK TAPGRGGYIR DTVISDVQME DVDVAIAFTG DWPSHPDDQF DPAALPVVSH ITLKNMTGTR ISVAGVLSGI AGDPFTDICL
401: SNINFSLADS ASPTSHWSCS NVSGYSELVF PEPCLDLQTQ SSDASVCSTL PSFHAAAIAA A

Best Arabidopsis Sequence Match ( AT3G16850.1 )
(BLAST)

001: MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C86]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.