Factsheet for GSMUA_Achr11P18030_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	65.76	85.55
GSMUA_Achr11P...	Banana	extracellular, vacuole	62.11	76.63
Os12t0554800-01	Rice	cytosol, extracellular	53.19	68.87
KXG29050	Sorghum	extracellular	55.19	67.18
Os11t0658800-01	Rice	extracellular	54.46	66.59
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	54.64	65.65
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	54.1	64.99
TraesCS5D01G102900.1	Wheat	unclear	53.01	64.81
TraesCS5B01G097100.2	Wheat	extracellular	52.82	64.59
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	53.19	63.9
Zm00001d023813_P001	Maize	extracellular, vacuole	53.19	63.34
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	51.37	61.98
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	53.37	61.81
Zm00001d048696_P001	Maize	extracellular	54.28	60.32
KRH37050	Soybean	extracellular, vacuole	49.54	60.18
VIT_07s0005g00890.t01	Wine grape	extracellular	51.91	59.75
KRH69264	Soybean	extracellular	48.09	58.02
KRH02302	Soybean	extracellular	47.36	57.91
HORVU5Hr1G023800.7	Barley	plastid	53.92	57.7
VIT_05s0077g01740.t01	Wine grape	nucleus	24.77	57.63
KRH12027	Soybean	extracellular, vacuole	49.18	57.32
KRH50791	Soybean	extracellular	46.81	57.24
KRH31843	Soybean	extracellular	47.36	57.02
PGSC0003DMT400018848	Potato	extracellular	45.72	54.92
CDY33922	Canola	extracellular	44.26	54.73
PGSC0003DMT400081328	Potato	extracellular	45.54	54.47
GSMUA_Achr8P06180_001	Banana	extracellular	38.98	54.45
Bra022182.1-P	Field mustard	extracellular, golgi	44.44	53.86
AT3G16850.1	Thale cress	vacuole	44.63	53.85
CDY08036	Canola	cytosol, nucleus, vacuole	36.98	53.85
Solyc06g009790.2.1	Tomato	extracellular	44.81	53.83
CDY54633	Canola	extracellular	43.9	53.79
GSMUA_AchrUn_...	Banana	extracellular	38.43	53.69
Bra037429.1-P	Field mustard	extracellular	43.35	53.6
CDX82390	Canola	extracellular	43.72	53.45
CDX92101	Canola	extracellular, golgi	44.26	53.41
AT3G06770.5	Thale cress	extracellular	43.35	53.24
Bra001642.1-P	Field mustard	vacuole	43.72	53.22
KRG96478	Soybean	endoplasmic reticulum, extracellular	46.63	53.11
CDX95899	Canola	extracellular	43.72	52.98
KRH68221	Soybean	extracellular	47.91	52.92
CDX74085	Canola	cytoskeleton, cytosol, vacuole	36.61	52.89
GSMUA_Achr11P...	Banana	cytosol	63.39	52.57
AT5G49215.1	Thale cress	extracellular, vacuole	42.81	52.34
Bra020656.1-P	Field mustard	extracellular, plasma membrane	44.26	51.7
Bra001215.1-P	Field mustard	extracellular	42.26	51.67
Solyc09g075460.2.1	Tomato	extracellular	45.17	51.67
CDY56436	Canola	extracellular, vacuole	44.08	51.05
CDY05643	Canola	extracellular, plasma membrane, plastid	44.08	50.63
GSMUA_Achr4P08470_001	Banana	extracellular	37.89	50.61
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	35.88	48.52
GSMUA_Achr6P14280_001	Banana	cytosol	35.15	48.01
CDX86247	Canola	plasma membrane, plastid	43.17	47.31
GSMUA_Achr8P19900_001	Banana	cytosol	35.7	47.23
GSMUA_Achr10P...	Banana	cytosol	34.97	46.6
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	36.07	44.8
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	14.21	44.32
GSMUA_Achr4P05580_001	Banana	cytosol	23.68	41.67
GSMUA_Achr11P...	Banana	cytosol	23.5	41.35
GSMUA_Achr11P...	Banana	cytosol	22.59	40.66
GSMUA_Achr11P...	Banana	extracellular	34.97	40.34
GSMUA_Achr11P...	Banana	mitochondrion	34.24	38.29
GSMUA_Achr3P10280_001	Banana	mitochondrion	32.42	37.16
GSMUA_Achr9P18190_001	Banana	mitochondrion	32.79	36.66
GSMUA_Achr5P22120_001	Banana	extracellular	31.33	34.96
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	31.51	34.67
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	10.93	29.85
GSMUA_Achr3P11090_001	Banana	extracellular	18.58	21.98

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr11G18030_001	EnsemblPlants:GSMUA_Achr11P18030_001	EnsemblPlants:GSMUA_Achr11T18030_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0RT83	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF5
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0002951F23	SEG:seg	:	:	:

Description

Putative Probable polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr11G18030_001]

Coordinates

chr11:-:19529549..19532023

Molecular Weight (calculated)

59734.8 Da

IEP (calculated)

6.088

GRAVY (calculated)

0.102

Length

549 amino acids

Sequence
(BLAST)

001: MSSANHLCYY IACSLQVVVL LLLAVAVAVE VEERGDGYCK LKNGLTPRPH SVTITEFGAV GDGVTLNTVA FQNAVFYVRS FADKGGAQLY VPKGRWLTGS
101: FNLTSHLTLF LDEDAVIIGS QDASQWPTVE PLPSYGQGID LPGERHRSLI NGYNLTDVFH SISLYTMLRL VCGTGNNGII DGQGSVWWEW FRTHTLNYSR
201: PHLLEFVSSC DIVISNLTFL NPPAWSIHPV YSSNVTVQNI VIQASSDSPY TNGVVPDSCS SFCIEDCSIS VGHDAIAVKS GWDNYGISFG RPSSNIQINN
301: VHLQTSLGSA LAFGSEMSGG ISDIHVKHLH VHDSFTGIIF KTTRGRGGFI KDIVISDVEM ENVHEAFRFT GQCGAHPDDQ YDPDALPTIK QVTIKNVIGT
401: NISRAGVLSG IDQDPFTAIC LANISLSITS DLSNSWTCSN VSGFSESVFP QPCSDLSLNS SLFCFSLENF SGLAQLTNIL AKFFPINPHK SIFSSMIESL
501: HTSFLSCIAP PPIEKKICIS DDNVFACTAR FLHSKPVRKI FASCRSSNV

Best Arabidopsis Sequence Match ( AT3G16850.1 )
(BLAST)

001: MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C86]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.