Factsheet for GSMUA_Achr3P27460_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10898	Canola	cytosol	19.9	78.43
PGSC0003DMT400094734	Potato	cytosol	33.33	63.81
TraesCS7A01G019700.1	Wheat	cytosol	31.84	52.03
TraesCS7A01G019900.1	Wheat	cytosol	61.69	46.27
TraesCS7A01G019500.1	Wheat	cytosol	61.19	45.9
CDY10899	Canola	cytosol	20.9	43.75
GSMUA_Achr4P05580_001	Banana	cytosol	64.18	41.35
CDY70893	Canola	cytosol	58.71	32.96
CDY69255	Canola	cytosol	58.71	31.38
GSMUA_Achr11P...	Banana	cytosol	46.77	30.82
GSMUA_Achr11P...	Banana	cytosol	47.26	30.45
EER89047	Sorghum	extracellular, vacuole	74.13	30.1
Os06t0106800-01	Rice	extracellular	71.14	29.48
Zm00001d035899_P001	Maize	extracellular	69.65	28.81
GSMUA_Achr11P...	Banana	extracellular	67.16	28.36
TraesCS7D01G016300.2	Wheat	extracellular	65.67	26.99
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	64.18	26.93
CDY44105	Canola	cytosol, nucleus, plasma membrane	58.71	26.11
KRH59960	Soybean	nucleus	63.68	26.02
KRH48075	Soybean	extracellular	62.19	25.93
VIT_02s0025g00260.t01	Wine grape	extracellular	61.69	25.83
Solyc06g030520.1.1	Tomato	cytosol	14.43	25.44
KRH41230	Soybean	nucleus	62.19	25.3
KRH06594	Soybean	mitochondrion	61.69	25.25
CDY65355	Canola	extracellular	59.2	25.21
PGSC0003DMT400055769	Potato	extracellular	59.7	25.16
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	64.68	24.95
KRH00832	Soybean	nucleus	59.7	24.79
TraesCSU01G066000.1	Wheat	golgi, unclear	64.68	24.71
KRH48076	Soybean	extracellular	58.21	24.68
Bra007609.1-P	Field mustard	extracellular	57.71	24.68
PGSC0003DMT400000538	Potato	extracellular	58.21	24.63
CDY48913	Canola	extracellular	57.71	24.63
CDY69951	Canola	cytosol	15.42	24.6
Solyc05g049980.2.1	Tomato	extracellular	59.2	24.49
KRH40394	Soybean	extracellular, nucleus	58.71	24.38
AT4G23500.1	Thale cress	extracellular, plasma membrane	59.7	24.24
Bra013697.1-P	Field mustard	extracellular, plasma membrane	59.2	24.14
Solyc08g081480.2.1	Tomato	extracellular	57.71	24.02
PGSC0003DMT400032104	Potato	extracellular	57.71	24.02
Bra019299.1-P	Field mustard	extracellular, plasma membrane	58.71	23.94
PGSC0003DMT400065330	Potato	nucleus	23.88	23.41
AT3G61490.4	Thale cress	cytosol, plastid	61.19	20.88
Solyc01g094970.2.1	Tomato	extracellular	41.79	20.64
GSMUA_Achr8P06180_001	Banana	extracellular	38.31	19.59
GSMUA_AchrUn_...	Banana	extracellular	35.82	18.32
GSMUA_Achr10P...	Banana	cytosol	34.83	16.99
GSMUA_Achr8P19900_001	Banana	cytosol	33.83	16.39
GSMUA_Achr4P08470_001	Banana	extracellular	33.33	16.3
GSMUA_Achr6P14280_001	Banana	cytosol	31.84	15.92
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	31.84	15.17
GSMUA_Achr11P...	Banana	extracellular, vacuole	30.35	13.71
GSMUA_Achr3P10280_001	Banana	mitochondrion	30.85	12.94
GSMUA_Achr4P15650_001	Banana	extracellular, plasma membrane, vacuole	25.87	12.81
GSMUA_Achr9P18190_001	Banana	mitochondrion	30.85	12.63
GSMUA_Achr11P...	Banana	mitochondrion	28.86	11.81
GSMUA_Achr5P22120_001	Banana	extracellular	28.36	11.59
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	28.36	11.42
GSMUA_Achr11P...	Banana	extracellular	29.85	10.93
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	21.39	9.73
GSMUA_Achr11P...	Banana	cytosol	29.35	8.91
KRH33610	Soybean	plastid	5.97	6.67
GSMUA_Achr3P11090_001	Banana	extracellular	14.43	6.25
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	2.49	2.84

Protein Annotations

EnsemblPlants:GSMUA_Achr3P27460_001	EnsemblPlants:GSMUA_Achr3T27460_001	EnsemblPlantsGene:GSMUA_Achr3G27460_001	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
InterPro:Glyco_hydro_28	InterPro:IPR012334	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF7
PFAM:PF00295	SUPFAM:SSF51126	UniParc:UPI000295C5EE	UniProt:M0SIB2	MapMan:50.3.2	:

Description

Probable polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr3G27460_001]

Coordinates

chr3:-:27013614..27014219

Molecular Weight (calculated)

21530.8 Da

IEP (calculated)

6.490

GRAVY (calculated)

0.013

Length

201 amino acids

Sequence
(BLAST)

001: MPSQHIVIRR LTCVSPTSAV IALGSEMSGG IRDVRAEDIT ALNSESGIRI KTAVGRGAYV KDVFVRRMNL NTMKWVFWMT GSYKSHPDDK YDPNAIPMVD
101: GISYSEVVAY NVTMAGRLEG IPSAPFTGIC VSNVTVQLAK SMKTPWYCAD VEGVSSGVTP AACASLADQG AAAAPCPFPT DASPMDGFQL QQCTYIKSYD
201: A

Best Arabidopsis Sequence Match ( AT3G61490.1 )
(BLAST)

001: MKNILACIVT IITLSNLITI SQGRRVSQSF ETFEYTAIIC RSHSASITEY GGVGDGKTLN TKAFQSAVDH LSQYSSEGGA QLFVPAGKWL TGSFNLTSHF
101: TLFLHKDAIL LAAQDLNEYP ILKALPSYGR GRDAAGGRFA SLIFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR PYLIELMFSD TIQISNLTFL
201: DSPSWNIHPV YSSNIIVKGV TIIAPVKSPN TDGINPDSCT NTRIEDCYII SGDDCIAVKS GWDEYGISFG MPTKHLVIRR LTCISPYSAA IALGSEMSGG
301: IEDVRAEDIT AYQTESGVRI KTAVGRGAFV KNIYVKGMNL HTMKWVFWMT GNYKAHADSH YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFTGIC
401: ISNATISMAA KHKKAIWMCS DVEGVTSGVD PKPCDLLDGQ ESETTKKKMI DGGCDFPTDV LEIDNVELKT CSYQMS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.