Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 5
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra019299.1-P | Field mustard | extracellular, plasma membrane | 94.93 | 94.93 |
AT4G23500.1 | Thale cress | extracellular, plasma membrane | 93.1 | 92.73 |
CDY44105 | Canola | cytosol, nucleus, plasma membrane | 83.77 | 91.37 |
PGSC0003DMT400032104 | Potato | extracellular | 67.95 | 69.36 |
Solyc08g081480.2.1 | Tomato | extracellular | 66.94 | 68.32 |
GSMUA_Achr4P05580_001 | Banana | cytosol | 39.96 | 63.14 |
Bra018023.1-P | Field mustard | extracellular | 59.63 | 62.69 |
Bra007609.1-P | Field mustard | extracellular | 59.43 | 62.34 |
Bra018004.1-P | Field mustard | cytosol | 54.97 | 62.01 |
GSMUA_Achr11P... | Banana | cytosol | 38.95 | 61.54 |
GSMUA_Achr11P... | Banana | extracellular | 58.62 | 60.71 |
GSMUA_Achr11P... | Banana | cytosol | 37.53 | 60.66 |
Os06t0106800-01 | Rice | extracellular | 58.42 | 59.38 |
GSMUA_Achr3P27460_001 | Banana | extracellular, plastid | 24.14 | 59.2 |
EER89047 | Sorghum | extracellular, vacuole | 59.43 | 59.19 |
Zm00001d035899_P001 | Maize | extracellular | 57.81 | 58.64 |
Os03t0124900-01 | Rice | extracellular | 52.54 | 56.55 |
TraesCS5A01G513600.1 | Wheat | extracellular | 51.72 | 56.54 |
TraesCS7D01G016300.2 | Wheat | extracellular | 55.98 | 56.44 |
EER95599 | Sorghum | extracellular | 51.32 | 54.64 |
Zm00001d027441_P001 | Maize | plasma membrane | 50.71 | 54.0 |
TraesCS7A01G019400.1 | Wheat | extracellular, plastid, vacuole | 55.98 | 52.98 |
TraesCS4B01G344700.1 | Wheat | extracellular | 51.93 | 52.67 |
TraesCS7A01G019900.1 | Wheat | cytosol | 28.6 | 52.61 |
TraesCSU01G066000.1 | Wheat | golgi, unclear | 55.78 | 52.28 |
TraesCS7A01G019500.1 | Wheat | cytosol | 28.19 | 51.87 |
Zm00001d018548_P001 | Maize | cytosol | 23.12 | 49.14 |
Bra003485.1-P | Field mustard | extracellular, golgi | 43.81 | 47.16 |
Zm00001d010681_P001 | Maize | cytosol | 26.98 | 47.0 |
Bra007662.1-P | Field mustard | extracellular, plasma membrane | 43.41 | 46.52 |
Bra013734.1-P | Field mustard | extracellular, vacuole | 40.77 | 45.27 |
Bra011440.1-P | Field mustard | extracellular | 43.0 | 44.73 |
Bra037005.1-P | Field mustard | extracellular | 42.39 | 43.82 |
Bra037429.1-P | Field mustard | extracellular | 39.35 | 43.69 |
Bra019264.1-P | Field mustard | extracellular, vacuole | 39.76 | 43.46 |
Bra028511.1-P | Field mustard | extracellular | 39.15 | 43.18 |
GSMUA_Achr7P24560_001 | Banana | cytosol, nucleus, vacuole | 15.21 | 42.61 |
TraesCS7A01G019700.1 | Wheat | cytosol | 10.55 | 42.28 |
Bra001642.1-P | Field mustard | vacuole | 38.54 | 42.13 |
Bra022182.1-P | Field mustard | extracellular, golgi | 38.54 | 41.94 |
Bra001215.1-P | Field mustard | extracellular | 37.73 | 41.43 |
Bra020656.1-P | Field mustard | extracellular, plasma membrane | 39.15 | 41.06 |
Bra039462.1-P | Field mustard | extracellular, mitochondrion, plastid | 38.34 | 37.65 |
Bra016521.1-P | Field mustard | extracellular, golgi, plastid | 37.53 | 36.49 |
Bra032138.1-P | Field mustard | cytosol | 55.38 | 34.12 |
Bra035299.1-P | Field mustard | extracellular, plasma membrane, vacuole | 22.92 | 23.64 |
Bra007626.1-P | Field mustard | mitochondrion | 23.12 | 19.62 |
Protein Annotations
Gene3D:2.160.20.10 | MapMan:50.3.2 | EnsemblPlantsGene:Bra013697 | EnsemblPlants:Bra013697.1 | EnsemblPlants:Bra013697.1-P | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 |
GO:GO:0016798 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | UniProt:M4DB37 | PFAM:PF00295 | PANTHER:PTHR31339 |
PANTHER:PTHR31339:SF7 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SUPFAM:SSF51126 | SignalP:SignalP-noTM | UniParc:UPI0002545CE8 |
SEG:seg | : | : | : | : | : |
Description
AT4G23500 (E=1e-265) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein
Coordinates
chrA01:+:7215242..7218319
Molecular Weight (calculated)
54404.5 Da
IEP (calculated)
5.701
GRAVY (calculated)
-0.198
Length
493 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSLLYTIGS LLILLLSHDG GFTGAADAEH TFRATDIHTH RHRRNHGHRR GEEFEYSALS CRAYSASLDE FGAVGDGVTS NTAAFRDAVS QLSHFADYGG
101: SLLFVPAGRW LTGSFNLTSH FTLFLHRDAV LLASQEESDY EVIEPLPSYG RGRDTDGGRF ISLLFGSNLT DVVITGENGT IDGQGEPWWG KFKRGELKYT
201: RPYLIEIMHS DGIQISNLTF LNSPSWHIHP VYSSNIVIQD LTILAPVTVP NTDGINPDSC TNTRIEDCYI VSGDDCIAVK SGWDQYGINY GMPTKQLLIR
301: RLTCISPDSA VIALGSEMSG GIEDVRAEDI IAINSESGIR IKTAIGRGGY VKDVYVRGMT MQTMKYVFWM TGSYGSHPDE HYDPNALPVI QNINYQDMVA
401: ENVTMPAQLA GITGDQFTGI CISNVTITLS KKPKKVLWNC TDVSGYTSGV TPEPCQLLPE KQPGTVVPCN FPESSIPIDE VKLQRCYSRR RLM
101: SLLFVPAGRW LTGSFNLTSH FTLFLHRDAV LLASQEESDY EVIEPLPSYG RGRDTDGGRF ISLLFGSNLT DVVITGENGT IDGQGEPWWG KFKRGELKYT
201: RPYLIEIMHS DGIQISNLTF LNSPSWHIHP VYSSNIVIQD LTILAPVTVP NTDGINPDSC TNTRIEDCYI VSGDDCIAVK SGWDQYGINY GMPTKQLLIR
301: RLTCISPDSA VIALGSEMSG GIEDVRAEDI IAINSESGIR IKTAIGRGGY VKDVYVRGMT MQTMKYVFWM TGSYGSHPDE HYDPNALPVI QNINYQDMVA
401: ENVTMPAQLA GITGDQFTGI CISNVTITLS KKPKKVLWNC TDVSGYTSGV TPEPCQLLPE KQPGTVVPCN FPESSIPIDE VKLQRCYSRR RLM
001: MTSLSTAGYL LLLLLLPISY DGGFIGAADA EHDLRATDLH NHRHRRHRNH HRGEEFEYSA ISCRAYSASL DEFGAVGDGV TSNTAAFRDA VSQLSRFADY
101: GGSLLFVPAG RWLTGNFNLT SHFTLFLHRD AVILASQEES DYEVIEPLPS YGRGRDTDGG RFISLLFGSN LTDVVITGEN GTIDGQGEPW WGKFKRGELK
201: YTRPYLIEIM HSDGIQISNL TFLNSPSWHI HPVYSSNIYI QGLTILAPVT VPNTDGINPD SCTNTRIEDC YIVSGDDCIA VKSGWDQYGI NYGMPTKQLL
301: IRRLTCISPD SAVIALGSEM SGGIEDVRAE DIVAINSESG IRIKTAIGRG GYVKDVYVRG MTMMTMKYVF WMTGSYGSHP DDHYDPKALP VIQNINYQDM
401: VAENVTMPAQ LAGISGDQFT GICISNVTIT LSKKPKKVLW NCTDVSGYTS GVTPQPCQLL PEKQPGTVVP CNFPEDPIPI DEVKLQRCYS RRRNM
101: GGSLLFVPAG RWLTGNFNLT SHFTLFLHRD AVILASQEES DYEVIEPLPS YGRGRDTDGG RFISLLFGSN LTDVVITGEN GTIDGQGEPW WGKFKRGELK
201: YTRPYLIEIM HSDGIQISNL TFLNSPSWHI HPVYSSNIYI QGLTILAPVT VPNTDGINPD SCTNTRIEDC YIVSGDDCIA VKSGWDQYGI NYGMPTKQLL
301: IRRLTCISPD SAVIALGSEM SGGIEDVRAE DIVAINSESG IRIKTAIGRG GYVKDVYVRG MTMMTMKYVF WMTGSYGSHP DDHYDPKALP VIQNINYQDM
401: VAENVTMPAQ LAGISGDQFT GICISNVTIT LSKKPKKVLW NCTDVSGYTS GVTPQPCQLL PEKQPGTVVP CNFPEDPIPI DEVKLQRCYS RRRNM
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O81746]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.