Factsheet for Bra007609.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
extracellular 5
plasma membrane 4
endoplasmic reticulum 3
vacuole 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48913	Canola	extracellular	99.57	99.36
PGSC0003DMT400094734	Potato	cytosol	16.6	74.29
AT3G61490.4	Thale cress	cytosol, plastid	91.7	73.17
PGSC0003DMT400055769	Potato	extracellular	73.83	72.75
Solyc05g049980.2.1	Tomato	extracellular	73.62	71.19
Solyc01g094970.2.1	Tomato	extracellular	61.06	70.52
KRH48075	Soybean	extracellular	71.49	69.71
KRH00832	Soybean	nucleus	70.21	68.18
KRH40394	Soybean	extracellular, nucleus	70.0	67.98
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	69.15	67.85
KRH06594	Soybean	mitochondrion	70.64	67.62
KRH48076	Soybean	extracellular	68.09	67.51
PGSC0003DMT400000538	Potato	extracellular	68.09	67.37
GSMUA_Achr4P05580_001	Banana	cytosol	42.55	64.1
Bra018023.1-P	Field mustard	extracellular	60.85	60.98
GSMUA_Achr11P...	Banana	cytosol	40.43	60.9
GSMUA_Achr11P...	Banana	cytosol	39.36	60.66
Os06t0106800-01	Rice	extracellular	62.34	60.41
Bra019299.1-P	Field mustard	extracellular, plasma membrane	62.98	60.04
EER89047	Sorghum	extracellular, vacuole	63.19	60.0
Bra013697.1-P	Field mustard	extracellular, plasma membrane	62.34	59.43
Zm00001d035899_P001	Maize	extracellular	61.28	59.26
GSMUA_Achr11P...	Banana	extracellular	59.36	58.61
TraesCS5A01G513600.1	Wheat	extracellular	55.96	58.31
TraesCS7D01G016300.2	Wheat	extracellular	60.43	58.08
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	24.68	57.71
Bra018004.1-P	Field mustard	cytosol	52.77	56.75
TraesCS7A01G019900.1	Wheat	cytosol	32.34	56.72
Os03t0124900-01	Rice	extracellular	55.11	56.55
TraesCS7A01G019500.1	Wheat	cytosol	32.13	56.34
Zm00001d027441_P001	Maize	plasma membrane	55.11	55.94
EER95599	Sorghum	extracellular	54.68	55.51
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	60.0	54.13
TraesCSU01G066000.1	Wheat	golgi, unclear	60.43	53.99
TraesCS4B01G344700.1	Wheat	extracellular	55.32	53.5
Zm00001d018548_P001	Maize	cytosol	24.68	50.0
Zm00001d010681_P001	Maize	cytosol	29.15	48.41
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	17.66	47.16
TraesCS7A01G019700.1	Wheat	cytosol	11.91	45.53
Bra003485.1-P	Field mustard	extracellular, golgi	43.62	44.76
Bra007662.1-P	Field mustard	extracellular, plasma membrane	43.4	44.35
Bra013734.1-P	Field mustard	extracellular, vacuole	41.7	44.14
Bra019264.1-P	Field mustard	extracellular, vacuole	41.49	43.24
Bra028511.1-P	Field mustard	extracellular	40.85	42.95
Bra022182.1-P	Field mustard	extracellular, golgi	40.85	42.38
Bra001642.1-P	Field mustard	vacuole	40.21	41.91
Bra037429.1-P	Field mustard	extracellular	39.57	41.89
Bra037005.1-P	Field mustard	extracellular	41.28	40.67
Bra011440.1-P	Field mustard	extracellular	40.64	40.3
Bra020656.1-P	Field mustard	extracellular, plasma membrane	39.57	39.57
Bra001215.1-P	Field mustard	extracellular	37.45	39.2
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	38.3	35.86
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	37.66	34.91
Solyc06g030520.1.1	Tomato	cytosol	8.3	34.21
Bra032138.1-P	Field mustard	cytosol	57.87	34.0
PGSC0003DMT400065330	Potato	nucleus	12.55	28.78
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	23.19	22.8
Bra007626.1-P	Field mustard	mitochondrion	22.55	18.24

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra007609	EnsemblPlants:Bra007609.1	EnsemblPlants:Bra007609.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4CTR5	PFAM:PF00295	PANTHER:PTHR31339
PANTHER:PTHR31339:SF12	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI00025429C1
SEG:seg	:	:	:	:	:

Description

AT3G61490 (E=1e-251) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA09:+:30007415..30009730

Molecular Weight (calculated)

51394.2 Da

IEP (calculated)

6.371

GRAVY (calculated)

-0.103

Length

470 amino acids

Sequence
(BLAST)

001: MKNILSCIVT IITLSFLTTN AQGRKVSQSY ETYEYTAITC RSHSASITDF GGVGDGKTLN TKAFQSAVDH LSQYSSDGGA QLFVPAGKWL TGSFSLTSHF
101: TLFLHKDATL LAAQDLEEYL VLKALPSYGR GRDAAGGRFA SLVFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR PYLIELMFSD TIQISNITLI
201: DSPSWNIHPV YSSNIIVKGV TIIAPVKSPN TDGINPDSCT NTRIEDCYII SGDDCVAVKS GWDEYGISFG MPTKHLIIRR LTCISPYSAA IALGSEMSGG
301: IEDVRAEEIT AYQTESGVRI KTAVGRGAFV RNVYVRGMRL HTMKWVFWMT GNYKAHADSH YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFKGIC
401: ISNATISMAV KHKKVMWMCS DVEGVTSGVD PKPCDLLDGK QEKMDGGCEF PSDVLEIDNV ELKSCSYQMN

Best Arabidopsis Sequence Match ( AT3G61490.4 )
(BLAST)

001: MSLFAITSAF SEDNVTAISS NQLIPLNDKI IANLIRSPNT QTKSLNLASS FLHSLSAYKY SYSLLLTSSS NHLASPHSQR AHKSQVILFL SLKHKHTQMY
101: KQTHHFCFQI YKTMKNILAC IVTIITLSNL ITISQGRRVS QSFETFEYTA IICRSHSASI TEYGGVGDGK TLNTKAFQSA VDHLSQYSSE GGAQLFVPAG
201: KWLTGSFNLT SHFTLFLHKD AILLAAQDLN EYPILKALPS YGRGRDAAGG RFASLIFGTN LSDVIITGNN GTIDGQGSFW WQKFHGGKLK YTRPYLIELM
301: FSDTIQISNL TFLDSPSWNI HPVYSSNIIV KGVTIIAPVK SPNTDGINPD SCTNTRIEDC YIISGDDCIA VKSGWDEYGI SFGMPTKHLV IRRLTCISPY
401: SAAIALGSEM SGGIEDVRAE DITAYQTESG VRIKTAVGRG AFVKNIYVKG MNLHTMKWVF WMTGNYKAHA DSHYDPHALP EITGINYRDI VAENVSMAGR
501: LEGISGDPFT GICISNATIS MAAKHKKAIW MCSDVEGVTS GVDPKPCDLL DGQESETTKK KMIDGGCDFP TDVLEIDNVE LKTCSYQMS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LS88]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.