Factsheet for Bra037005.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46115	Canola	extracellular	98.32	99.15
Bra011440.1-P	Field mustard	extracellular	91.61	92.19
AT4G33440.1	Thale cress	extracellular	86.79	87.16
KRH53903	Soybean	extracellular, plasma membrane, plastid	66.04	66.04
Solyc06g060170.2.1	Tomato	cytosol, golgi, plasma membrane	64.78	63.32
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	68.55	63.25
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	64.36	63.17
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	55.56	59.95
TraesCS7D01G320900.1	Wheat	plastid	59.33	58.35
Os08t0107300-00	Rice	extracellular, mitochondrion	58.91	58.3
TraesCS7A01G323800.3	Wheat	plastid	59.12	58.14
TraesCS7B01G224700.1	Wheat	plastid	58.49	57.53
KXG24195	Sorghum	endoplasmic reticulum, extracellular, plasma membrane, plastid	59.54	57.14
Zm00001d034990_P001	Maize	plasma membrane	58.49	56.59
Bra028511.1-P	Field mustard	extracellular	49.06	52.35
Zm00001d021964_P001	Maize	cytosol	18.24	51.79
Bra013734.1-P	Field mustard	extracellular, vacuole	47.59	51.13
Bra019264.1-P	Field mustard	extracellular, vacuole	46.75	49.45
HORVU7Hr1G077560.12	Barley	plastid	49.06	48.45
Bra007662.1-P	Field mustard	extracellular, plasma membrane	44.44	46.09
Bra003485.1-P	Field mustard	extracellular, golgi	44.23	46.07
Bra022182.1-P	Field mustard	extracellular, golgi	42.14	44.37
Bra018023.1-P	Field mustard	extracellular	42.98	43.71
Bra018004.1-P	Field mustard	cytosol	39.83	43.48
Bra001642.1-P	Field mustard	vacuole	40.88	43.24
Bra013697.1-P	Field mustard	extracellular, plasma membrane	43.82	42.39
Bra019299.1-P	Field mustard	extracellular, plasma membrane	43.82	42.39
Bra007609.1-P	Field mustard	extracellular	40.67	41.28
Bra001215.1-P	Field mustard	extracellular	38.78	41.2
Bra037429.1-P	Field mustard	extracellular	37.95	40.77
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	42.98	40.43
Bra020656.1-P	Field mustard	extracellular, plasma membrane	38.16	38.72
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	40.04	38.05
Bra032138.1-P	Field mustard	cytosol	39.2	23.38
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	22.01	21.97
Bra007626.1-P	Field mustard	mitochondrion	20.34	16.7

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra037005	EnsemblPlants:Bra037005.1	EnsemblPlants:Bra037005.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4F7E5	PFAM:PF00295
PANTHER:PTHR31339	PANTHER:PTHR31339:SF4	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI00025410E6	SEG:seg	:	:

Description

AT4G33440 (E=9e-222) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA03:+:28998261..29000740

Molecular Weight (calculated)

52476.9 Da

IEP (calculated)

7.775

GRAVY (calculated)

-0.083

Length

477 amino acids

Sequence
(BLAST)

001: MESEKTSVVS SIARPSWAFI VLAFTVLAIL SHQISSNSFL PLFIPTTTTR LHDPVTCSGF YLHDPSPKRI VMSITDFGGV GDGKTSNTEA FRRAVQHLRA
101: FAAEGGAQLN VPKGTWLSGS FNLTSNFTLF LEQGAVILGS KELEEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IEIKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAMARPS
301: TNIIIRRISG TTRTCSGVGI GSEMSGGIFN VTIQDIHVWD SAAGLRIKTD IGRGGYISNI TISNVFLEKV KVSIRFSRGS NDHPDDKWNP KAMPRVKGIY
401: ISNVVSVDSR KAPMLLGVEG ASFQDICLRN VTIFGLPQSE KWKCKDVSGY ASDVFPVSCP QLLQRKGLVS QCEQMSF

Best Arabidopsis Sequence Match ( AT4G33440.1 )
(BLAST)

001: MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84K13]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.