CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 4
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75352	Canola	extracellular	66.88	67.58
CDX68976	Canola	extracellular	66.46	67.3
Bra011440.1-P	Field mustard	extracellular	66.46	66.88
CDY46115	Canola	extracellular	66.04	66.6
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	71.91	66.34
AT4G33440.1	Thale cress	extracellular	66.04	66.32
Bra037005.1-P	Field mustard	extracellular	66.04	66.04
CDX72404	Canola	extracellular	64.99	65.54
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	64.15	62.96
Solyc06g060170.2.1	Tomato	cytosol, golgi, plasma membrane	63.94	62.5
GSMUA_Achr2P08050_001	Banana	cytosol, extracellular, golgi, mitochondrion	56.81	61.31
TraesCS7D01G320900.1	Wheat	plastid	61.01	60.0
TraesCS7A01G323800.3	Wheat	plastid	60.8	59.79
TraesCS7B01G224700.1	Wheat	plastid	60.17	59.18
Os08t0107300-00	Rice	extracellular, mitochondrion	58.7	58.09
KXG24195	Sorghum	endoplasmic reticulum, extracellular, plasma membrane, plastid	59.54	57.14
Zm00001d034990_P001	Maize	plasma membrane	58.91	57.0
HORVU7Hr1G077560.12	Barley	plastid	50.52	49.9
Zm00001d021964_P001	Maize	cytosol	17.19	48.81
KRH14547	Soybean	extracellular	45.07	48.21
KRG99037	Soybean	nucleus	44.23	47.74
KRG96607	Soybean	extracellular	46.75	47.65
KRH69147	Soybean	nucleus	46.33	47.63
KRH73576	Soybean	extracellular	27.46	47.46
KRH45957	Soybean	extracellular	44.03	47.4
KRH68340	Soybean	nucleus	46.33	47.22
KRH33649	Soybean	nucleus	45.91	47.2
KRH50791	Soybean	extracellular	42.98	45.66
KRH37050	Soybean	extracellular, vacuole	42.14	44.47
KRH02302	Soybean	extracellular	41.72	44.32
KRH55874	Soybean	cytosol	6.08	43.94
KRH69264	Soybean	extracellular	41.72	43.74
KRH31843	Soybean	extracellular	41.51	43.42
KRH12027	Soybean	extracellular, vacuole	42.14	42.68
KRH35238	Soybean	extracellular	41.51	42.49
KRH35240	Soybean	extracellular	41.51	42.04
KRH35239	Soybean	extracellular, plasma membrane, plastid	41.93	41.67
KRH41230	Soybean	nucleus	42.35	40.89
KRH48075	Soybean	extracellular	41.3	40.87
KRH59960	Soybean	nucleus	42.14	40.85
KRH08861	Soybean	extracellular	40.67	40.67
KRG91587	Soybean	cytosol, extracellular, plastid	20.75	40.57
KRH48076	Soybean	extracellular	40.25	40.51
KRH40394	Soybean	extracellular, nucleus	41.09	40.5
KRH00832	Soybean	nucleus	41.09	40.5
KRG96478	Soybean	endoplasmic reticulum, extracellular	40.67	40.25
KRH02590	Soybean	extracellular, golgi, mitochondrion, plastid	41.09	39.84
KRH38380	Soybean	extracellular	39.62	39.71
KRH12568	Soybean	plastid	40.46	39.47
KRH06594	Soybean	mitochondrion	40.46	39.31
KRH68221	Soybean	extracellular	40.88	39.24
KRH19342	Soybean	endoplasmic reticulum	40.25	39.1
KRH37525	Soybean	extracellular, plasma membrane	40.04	38.66
KRH33610	Soybean	plastid	8.6	22.78
KRG95330	Soybean	extracellular, plasma membrane, vacuole	21.59	22.1

Protein Annotations

EntrezGene:100814190	Gene3D:2.160.20.10	MapMan:50.3.2	EMBL:ACUP02003488	EnsemblPlantsGene:GLYMA_06G153900	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	UniProt:I1KBJ8	InterPro:IPR012334	EnsemblPlants:KRH53903
ProteinID:KRH53903	ProteinID:KRH53903.1	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF4	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI0001B63C1A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:12545134..12549371

Molecular Weight (calculated)

52355.4 Da

IEP (calculated)

7.786

GRAVY (calculated)

-0.119

Length

477 amino acids

Sequence
(BLAST)

001: MESGKTTFGA VVLGTCTRPS WALIFLLFTL VTFLTLHLPA RPVWFLSGLQ PGPYPTTTPT CAGFFRDVPP RKVVLSIEDF GGVGDGKTSN TESFRRAIRY
101: MQRFQNRGGA QLNIPTGTWL TGSFNLTSNF TLFLHHGAVI LASQDPKEWP IIEPLPSYGR GRERLGGRHI SLIHGNGISN VVITGQNGTV DGQGRMWWEL
201: WWNRTLEHTR GHLLELISSD NVLISNLTFR NSPFWTIHPV YCSNVVVKGM TILAPLNAPN TDGIDPDSST NVCIEDNYIE SGDDLVAIKS GWDHYGITMA
301: HPSTNIIVRR ISGTTPTCSG VGIGSEMSGG ISNITIENLH VWDSAAGVRI KSDKGRGGYI TNVSISDIRM ERVKIPIRFS RGSNDHPDDG WDPKAVPRFK
401: DILISNVVSV NSTKAPVLEG VEGSSFEGLC FKNITLHGVA LSARWRCEYV SGFATEVFPV PCPELRNNSY SSWCSAS

Best Arabidopsis Sequence Match ( AT4G33440.1 )
(BLAST)

001: MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84K13]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.