Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46115 | Canola | extracellular | 95.35 | 95.35 |
| CDX75352 | Canola | extracellular | 93.02 | 93.22 |
| CDX68976 | Canola | extracellular | 91.97 | 92.36 |
| AT4G33440.1 | Thale cress | extracellular | 88.37 | 88.0 |
| KRH53903 | Soybean | extracellular, plasma membrane, plastid | 65.54 | 64.99 |
| VIT_04s0044g01420.t01 | Wine grape | extracellular, golgi, vacuole | 69.34 | 63.44 |
| Solyc06g060170.2.1 | Tomato | cytosol, golgi, plasma membrane | 65.33 | 63.32 |
| PGSC0003DMT400030711 | Potato | extracellular, golgi, nucleus | 64.9 | 63.17 |
| GSMUA_Achr2P08050_001 | Banana | cytosol, extracellular, golgi, mitochondrion | 57.08 | 61.09 |
| TraesCS7D01G320900.1 | Wheat | plastid | 59.83 | 58.35 |
| TraesCS7A01G323800.3 | Wheat | plastid | 59.62 | 58.14 |
| Os08t0107300-00 | Rice | extracellular, mitochondrion | 58.77 | 57.68 |
| TraesCS7B01G224700.1 | Wheat | plastid | 58.99 | 57.53 |
| CDY69951 | Canola | cytosol | 15.22 | 57.14 |
| KXG24195 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane, plastid | 59.62 | 56.74 |
| Zm00001d034990_P001 | Maize | plasma membrane | 58.35 | 55.98 |
| CDY13383 | Canola | extracellular | 48.2 | 51.24 |
| CDX67513 | Canola | extracellular | 48.2 | 51.01 |
| CDY47619 | Canola | extracellular, vacuole | 47.57 | 50.68 |
| CDY03516 | Canola | extracellular, vacuole | 47.36 | 50.45 |
| Zm00001d021964_P001 | Maize | cytosol | 17.76 | 50.0 |
| CDX94222 | Canola | extracellular | 47.57 | 49.89 |
| CDY10970 | Canola | extracellular, vacuole | 47.15 | 49.45 |
| HORVU7Hr1G077560.12 | Barley | plastid | 49.68 | 48.65 |
| CDY53228 | Canola | extracellular | 11.21 | 47.32 |
| CDY11403 | Canola | extracellular, plasma membrane | 45.67 | 46.96 |
| CDY25090 | Canola | extracellular, golgi | 45.24 | 46.72 |
| CDX76617 | Canola | extracellular, plasma membrane | 45.24 | 46.52 |
| CDX67875 | Canola | extracellular, golgi | 45.03 | 46.51 |
| CDY70893 | Canola | cytosol | 34.04 | 44.97 |
| CDX92101 | Canola | extracellular, golgi | 42.28 | 43.96 |
| CDY69255 | Canola | cytosol | 34.67 | 43.62 |
| CDX95899 | Canola | extracellular | 41.65 | 43.49 |
| CDX82390 | Canola | extracellular | 40.8 | 42.98 |
| CDY08036 | Canola | cytosol, nucleus, vacuole | 34.25 | 42.97 |
| CDX74085 | Canola | cytoskeleton, cytosol, vacuole | 34.46 | 42.89 |
| CDY54633 | Canola | extracellular | 40.59 | 42.86 |
| CDY44105 | Canola | cytosol, nucleus, plasma membrane | 40.8 | 42.7 |
| CDY05907 | Canola | cytosol | 39.53 | 42.69 |
| CDY05885 | Canola | extracellular | 41.44 | 42.24 |
| CDY08113 | Canola | extracellular | 39.75 | 41.23 |
| CDY33922 | Canola | extracellular | 38.48 | 40.99 |
| CDY65355 | Canola | extracellular | 40.38 | 40.47 |
| CDX96676 | Canola | extracellular, golgi, plastid | 43.34 | 40.43 |
| CDY08095 | Canola | extracellular, plasma membrane | 42.28 | 40.4 |
| CDX83782 | Canola | extracellular, golgi, plastid | 43.13 | 40.24 |
| CDY10897 | Canola | cytosol, extracellular, peroxisome | 20.3 | 40.17 |
| CDY48913 | Canola | extracellular | 39.75 | 39.92 |
| CDY10898 | Canola | cytosol | 4.23 | 39.22 |
| CDY56436 | Canola | extracellular, vacuole | 39.11 | 39.03 |
| CDY20264 | Canola | extracellular | 39.11 | 38.7 |
| CDY39678 | Canola | extracellular | 39.11 | 38.7 |
| CDY05643 | Canola | extracellular, plasma membrane, plastid | 39.11 | 38.7 |
| CDY27797 | Canola | extracellular, mitochondrion, plastid | 40.17 | 37.92 |
| CDY41934 | Canola | extracellular, mitochondrion, plastid | 40.17 | 37.85 |
| CDX71719 | Canola | mitochondrion | 12.69 | 36.59 |
| CDX86247 | Canola | plasma membrane, plastid | 38.48 | 36.33 |
| CDY10899 | Canola | cytosol | 5.29 | 26.04 |
| CDY02392 | Canola | extracellular, plasma membrane, vacuole | 22.62 | 22.38 |
| CDY12962 | Canola | extracellular, plasma membrane, vacuole | 22.2 | 21.97 |
| CDY11375 | Canola | mitochondrion | 19.45 | 18.15 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | GO:A0A078C880 | EnsemblPlants:CDX72404 | ProteinID:CDX72404 | ProteinID:CDX72404.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0071555 | EnsemblPlantsGene:GSBRNA2T00099897001 | InterPro:Glyco_hydro_28 |
| InterPro:IPR012334 | PFAM:PF00295 | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF4 | InterPro:PbH1 | InterPro:Pectin_lyas_fold |
| InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | TMHMM:TMhelix | UniParc:UPI0004EEE341 | SEG:seg |
Description
BnaC07g44260D
Coordinates
chrLK031796:+:1066120..1068813
Molecular Weight (calculated)
51996.3 Da
IEP (calculated)
6.891
GRAVY (calculated)
-0.094
Length
473 amino acids
Sequence
(BLAST)
(BLAST)
001: MESEKTSVVS SIARPSWAFL LLAFTVLSIL SHQISSNSFL PLFIPTTTTR LQDPVTCSEF FLHDPSPKRI VMSITEFGGV GNGKTSNTEA FRRAVQHLRG
101: FAAEGGAQLN VPKGTWLSGS FNLTSNFTLF LEQGAVILGS KELEEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IEIKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMIAPNTDG IDPDSSTNVC IEDCYIESGD DLIAVKSGWD QYGMAMARPS
301: SNIIIRRISG TTRTCSGVGI GSEMSGGIFN ITIQDIHVWD SAAGLRIKTD IGRGGYISNI TISNVFLEKV KVPIRFSRGS NDHPDDKWDP RAMPRVKGIY
401: ISNVVSVDSR KAPMLLGVEG ASFQDICLRN VTLLGLPETE KWKCKDVSGY ASDVFPPSCP QLLESKGSVS QCE
101: FAAEGGAQLN VPKGTWLSGS FNLTSNFTLF LEQGAVILGS KELEEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IEIKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMIAPNTDG IDPDSSTNVC IEDCYIESGD DLIAVKSGWD QYGMAMARPS
301: SNIIIRRISG TTRTCSGVGI GSEMSGGIFN ITIQDIHVWD SAAGLRIKTD IGRGGYISNI TISNVFLEKV KVPIRFSRGS NDHPDDKWDP RAMPRVKGIY
401: ISNVVSVDSR KAPMLLGVEG ASFQDICLRN VTLLGLPETE KWKCKDVSGY ASDVFPPSCP QLLESKGSVS QCE
001: MEPEKNPTTV LSAITRPSWA FLLLVFTVLA ILSLQISSNS FLPLWIPTSQ YDDPVTCSGF FNHDPFPNRI VMSITDFGGV GDGKTSNTAA FRRAVRHLEG
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR
101: FAAEGGAQLN VPEGTWLSGS FNLTSNFTLF LERGALILGS KDLDEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI TGENGTIDGQ GKMWWELWWN
201: RTLVHTRGHL IELKNSHNIL ISNLTLLNSP FWTIHPVYCS NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAVARPS
301: SNIVIRRISG TTRTCSGVGI GSEMSGGIFN ITVEDIHVWD SAAGLRIKTD KGRGGYISNI TFNNVLLEKV KVPIRFSSGS NDHSDDKWDP KALPRVKGIY
401: ISNVVSLNSR KAPMLLGVEG TSFQDVCLRN VTLLGLPKTE KWKCKDVSGY ASDVFPLSCP QLLQKKGSIA QCSYR
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84K13]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.