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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • plastid 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:nucleus
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY10898 Canola cytosol 11.28 100.0
CDY10899 Canola cytosol 21.02 98.96
CDY69951 Canola cytosol 27.43 98.41
CDY70893 Canola cytosol 76.33 96.37
CDY69255 Canola cytosol 76.99 92.55
Bra013697.1-P Field mustard extracellular, plasma membrane 91.37 83.77
AT4G23500.1 Thale cress extracellular, plasma membrane 87.61 80.0
PGSC0003DMT400032104 Potato extracellular 68.81 64.39
Solyc08g081480.2.1 Tomato extracellular 67.7 63.35
GSMUA_Achr4P05580_001 Banana cytosol 43.14 62.5
GSMUA_Achr11P... Banana cytosol 42.26 61.22
GSMUA_Achr11P... Banana cytosol 40.71 60.33
GSMUA_Achr3P27460_001 Banana extracellular, plastid 26.11 58.71
CDY05885 Canola extracellular 60.18 58.62
CDY10897 Canola cytosol, extracellular, peroxisome 30.97 58.58
CDY65355 Canola extracellular 60.4 57.84
CDY48913 Canola extracellular 60.18 57.75
CDY05907 Canola cytosol 54.42 56.16
CDY08095 Canola extracellular, plasma membrane 60.4 55.15
GSMUA_Achr11P... Banana extracellular 57.74 54.83
CDY08113 Canola extracellular 54.65 54.17
Os06t0106800-01 Rice extracellular 57.96 54.02
EER89047 Sorghum extracellular, vacuole 59.07 53.94
CDY20264 Canola extracellular 56.19 53.14
Zm00001d035899_P001 Maize extracellular 57.08 53.09
CDY39678 Canola extracellular 55.97 52.93
Os03t0124900-01 Rice extracellular 53.32 52.62
TraesCS7A01G019900.1 Wheat cytosol 30.97 52.24
TraesCS5A01G513600.1 Wheat extracellular 51.99 52.11
TraesCS7A01G019500.1 Wheat cytosol 30.53 51.49
TraesCS7D01G016300.2 Wheat extracellular 55.31 51.12
EER95599 Sorghum extracellular 51.33 50.11
Zm00001d027441_P001 Maize plasma membrane 51.11 49.89
TraesCS4B01G344700.1 Wheat extracellular 52.43 48.77
Zm00001d018548_P001 Maize cytosol 24.78 48.28
TraesCS7A01G019400.1 Wheat extracellular, plastid, vacuole 55.31 47.98
TraesCSU01G066000.1 Wheat golgi, unclear 55.75 47.91
Zm00001d010681_P001 Maize cytosol 28.98 46.29
CDY08036 Canola cytosol, nucleus, vacuole 36.06 43.24
CDX67875 Canola extracellular, golgi 43.58 43.01
CDY53228 Canola extracellular 10.62 42.86
CDX74085 Canola cytoskeleton, cytosol, vacuole 35.84 42.63
CDY25090 Canola extracellular, golgi 43.14 42.58
CDY11403 Canola extracellular, plasma membrane 43.14 42.39
TraesCS7A01G019700.1 Wheat cytosol 11.28 41.46
CDY46115 Canola extracellular 42.92 41.01
CDY47619 Canola extracellular, vacuole 40.27 40.99
CDY03516 Canola extracellular, vacuole 40.27 40.99
CDX75352 Canola extracellular 42.7 40.89
CDX72404 Canola extracellular 42.7 40.8
CDX76617 Canola extracellular, plasma membrane 41.37 40.65
CDX68976 Canola extracellular 42.26 40.55
CDX94222 Canola extracellular 40.27 40.35
CDX71719 Canola mitochondrion 14.6 40.24
CDY33922 Canola extracellular 39.38 40.09
CDY13383 Canola extracellular 39.38 40.0
CDY10970 Canola extracellular, vacuole 39.82 39.91
CDY54633 Canola extracellular 38.94 39.29
CDX67513 Canola extracellular 38.72 39.15
CDX82390 Canola extracellular 38.27 38.53
CDX92101 Canola extracellular, golgi 38.72 38.46
CDX95899 Canola extracellular 38.05 37.97
CDY56436 Canola extracellular, vacuole 39.6 37.76
CDY05643 Canola extracellular, plasma membrane, plastid 39.16 37.03
CDX86247 Canola plasma membrane, plastid 38.72 34.93
GSMUA_Achr7P24560_001 Banana cytosol, nucleus, vacuole 13.5 34.66
CDY27797 Canola extracellular, mitochondrion, plastid 37.83 34.13
CDX83782 Canola extracellular, golgi, plastid 38.27 34.12
CDY41934 Canola extracellular, mitochondrion, plastid 37.83 34.06
CDX96676 Canola extracellular, golgi, plastid 38.05 33.92
CDY12962 Canola extracellular, plasma membrane, vacuole 22.35 21.13
CDY02392 Canola extracellular, plasma membrane, vacuole 22.12 20.92
CDY11375 Canola mitochondrion 23.23 20.71
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078HZQ9UniProt:A0A078HZQ9EnsemblPlants:CDY44105ProteinID:CDY44105
ProteinID:CDY44105.1GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150
GO:GO:0008152GO:GO:0016787GO:GO:0016798EnsemblPlantsGene:GSBRNA2T00079541001InterPro:Glyco_hydro_28InterPro:IPR012334
PFAM:PF00295PANTHER:PTHR31339PANTHER:PTHR31339:SF7InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSUPFAM:SSF51126
UniParc:UPI0004EE1CAESEG:seg::::
Description
BnaA01g13130DBnaA01g13130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZQ9]
Coordinates
chrLK032579:+:84110..87202
Molecular Weight (calculated)
49906.9 Da
IEP (calculated)
4.916
GRAVY (calculated)
-0.073
Length
452 amino acids
Sequence
(BLAST)
001: MVALPEPPMP NIPSEPPIYI LIAIVATMAT VAEKSLSTQP YRVELIQLSQ LSHFADYGGS LLFVPAGRWL TGSFNLTSHF TLFLHRDAVL LASQEESDYE
101: VIEPLPSYGR GRDTDGGRFI SLLFGFNLTD VVITGENGTI DGQGEPWWGK FKRGELKYTR PYLIEIMHSD GIQISNLTFL NSPSWHIHPV YSSNIVIQGL
201: TILAPVTVPN TDGINPDSCT NTRIEDCYIV SGDDCIAVKS GWDQYGINYG MPTKQLLIRR LTCISPDSAV IALGSEMSGG IEDVRAEDIV AINSESGIRI
301: KTAIGRGGYV KDVYVRGMTM QTMKYVFWMT GSYGSHPDEH YDLNALPLIQ NINYQDMVAE NVTMPAQLAG ITGDQFTGIC ISNVTITLSK KPKKVLWNCT
401: DVSGYTSGVT PEPCQLLPEK QPGTVVPCNF PESSIPIDEV KLQRCYSRRR LM
Best Arabidopsis Sequence Match ( AT4G23500.1 )
(BLAST)
001: MTSLSTAGYL LLLLLLPISY DGGFIGAADA EHDLRATDLH NHRHRRHRNH HRGEEFEYSA ISCRAYSASL DEFGAVGDGV TSNTAAFRDA VSQLSRFADY
101: GGSLLFVPAG RWLTGNFNLT SHFTLFLHRD AVILASQEES DYEVIEPLPS YGRGRDTDGG RFISLLFGSN LTDVVITGEN GTIDGQGEPW WGKFKRGELK
201: YTRPYLIEIM HSDGIQISNL TFLNSPSWHI HPVYSSNIYI QGLTILAPVT VPNTDGINPD SCTNTRIEDC YIVSGDDCIA VKSGWDQYGI NYGMPTKQLL
301: IRRLTCISPD SAVIALGSEM SGGIEDVRAE DIVAINSESG IRIKTAIGRG GYVKDVYVRG MTMMTMKYVF WMTGSYGSHP DDHYDPKALP VIQNINYQDM
401: VAENVTMPAQ LAGISGDQFT GICISNVTIT LSKKPKKVLW NCTDVSGYTS GVTPQPCQLL PEKQPGTVVP CNFPEDPIPI DEVKLQRCYS RRRNM
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O81746]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.