Factsheet for Solyc08g081480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

extracellular: 26583031
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032104	Potato	extracellular	96.89	96.89
CDY69951	Canola	cytosol	20.7	79.37
CDY70893	Canola	cytosol	55.28	74.58
CDY69255	Canola	cytosol	55.9	71.81
Solyc05g049980.2.1	Tomato	extracellular	68.94	68.52
CDY44105	Canola	cytosol, nucleus, plasma membrane	63.35	67.7
AT4G23500.1	Thale cress	extracellular, plasma membrane	68.74	67.07
Bra013697.1-P	Field mustard	extracellular, plasma membrane	68.32	66.94
Bra019299.1-P	Field mustard	extracellular, plasma membrane	68.12	66.73
Solyc01g094970.2.1	Tomato	extracellular	56.11	66.58
Solyc03g007950.2.1	Tomato	extracellular	63.15	65.31
GSMUA_Achr11P...	Banana	cytosol	42.03	65.06
GSMUA_Achr4P05580_001	Banana	cytosol	41.61	64.42
GSMUA_Achr11P...	Banana	cytosol	39.75	62.95
GSMUA_Achr11P...	Banana	extracellular	61.9	62.82
Zm00001d035899_P001	Maize	extracellular	62.53	62.14
Os03t0124900-01	Rice	extracellular	57.97	61.14
Os06t0106800-01	Rice	extracellular	61.28	61.03
EER89047	Sorghum	extracellular, vacuole	61.9	60.4
TraesCS5A01G513600.1	Wheat	extracellular	56.31	60.31
EER95599	Sorghum	extracellular	57.76	60.26
Zm00001d027441_P001	Maize	plasma membrane	57.35	59.83
GSMUA_Achr3P27460_001	Banana	extracellular, plastid	24.02	57.71
TraesCS7D01G016300.2	Wheat	extracellular	58.18	57.46
TraesCS4B01G344700.1	Wheat	extracellular	56.94	56.58
TraesCS7A01G019900.1	Wheat	cytosol	31.26	56.34
Zm00001d018548_P001	Maize	cytosol	26.5	55.17
TraesCS7A01G019500.1	Wheat	cytosol	30.23	54.48
TraesCSU01G066000.1	Wheat	golgi, unclear	59.01	54.18
TraesCS7A01G019400.1	Wheat	extracellular, plastid, vacuole	58.39	54.13
Zm00001d010681_P001	Maize	cytosol	30.85	52.65
TraesCS7A01G019700.1	Wheat	cytosol	11.8	46.34
GSMUA_Achr7P24560_001	Banana	cytosol, nucleus, vacuole	16.56	45.45
Solyc08g082170.2.1	Tomato	nucleus	43.06	44.54
Solyc06g009790.2.1	Tomato	extracellular	42.03	44.42
Solyc09g075460.2.1	Tomato	extracellular	43.48	43.75
Solyc06g060170.2.1	Tomato	cytosol, golgi, plasma membrane	42.24	41.8
Solyc07g042160.2.1	Tomato	nucleus	41.41	40.49
Solyc12g009210.1.1	Tomato	nucleus	39.54	38.59
Solyc03g117750.2.1	Tomato	extracellular, golgi	38.1	37.78
Solyc06g030520.1.1	Tomato	cytosol	8.28	35.09
Solyc03g051770.2.1	Tomato	cytosol	13.87	21.27

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	GO:GO:0030312	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:K4CPE5	PFAM:PF00295
PANTHER:PTHR31339	PANTHER:PTHR31339:SF7	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	EnsemblPlantsGene:Solyc08g081480.2
EnsemblPlants:Solyc08g081480.2.1	UniParc:UPI000276C0D5	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:+:64527642..64531010

Molecular Weight (calculated)

52898.1 Da

IEP (calculated)

5.035

GRAVY (calculated)

-0.056

Length

483 amino acids

Sequence
(BLAST)

001: MEFPLSTLSH IPAIRRVLLL AVVILAAFGN VHGRHRVHKW ETVEYPAISC RAHTASLTDF GGVGDGKTLN TDAFRTAVDH LSQFQSDGGS MLYVPAGKWL
101: TGSFNLTSHF TLYLDKDAVL LASQDENDYP VIAPLPSYGR GRDTEGGRFI SLIFGSNLTD VVITGENGTI DGQGQLWWDK FHNGELKFTR PYLIEIMYSD
201: NIQISSLTLV NSPSWNVHPV YCSNVIIQGI TILAPVRSPN TDGINPDSCI NTRIEDCYII SGDDCIAVKS GWDEYGVAFG MPTKQLAIRR ITCISPTSAT
301: IALGSEMSGG IQDVRAEDIV AINTESAVRI KTAVGRGGYV KDIYVRGVTM KTMKYVFWMT GDYGSHPDDN YDPNALPVIE NINYRDMVAE NVTIAAKLAG
401: ISGDPFTGIC ISNVTIEMAP KAKKLFWNCT DISGISSGVV PQPCDLLPDQ GMEYASPCNF PTESLPIDDM EIRTCSCRKK IYN

Best Arabidopsis Sequence Match ( AT4G23500.1 )
(BLAST)

001: MTSLSTAGYL LLLLLLPISY DGGFIGAADA EHDLRATDLH NHRHRRHRNH HRGEEFEYSA ISCRAYSASL DEFGAVGDGV TSNTAAFRDA VSQLSRFADY
101: GGSLLFVPAG RWLTGNFNLT SHFTLFLHRD AVILASQEES DYEVIEPLPS YGRGRDTDGG RFISLLFGSN LTDVVITGEN GTIDGQGEPW WGKFKRGELK
201: YTRPYLIEIM HSDGIQISNL TFLNSPSWHI HPVYSSNIYI QGLTILAPVT VPNTDGINPD SCTNTRIEDC YIVSGDDCIA VKSGWDQYGI NYGMPTKQLL
301: IRRLTCISPD SAVIALGSEM SGGIEDVRAE DIVAINSESG IRIKTAIGRG GYVKDVYVRG MTMMTMKYVF WMTGSYGSHP DDHYDPKALP VIQNINYQDM
401: VAENVTMPAQ LAGISGDQFT GICISNVTIT LSKKPKKVLW NCTDVSGYTS GVTPQPCQLL PEKQPGTVVP CNFPEDPIPI DEVKLQRCYS RRRNM

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O81746]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.