Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plasma membrane 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
26583031
extracellular: 29876421 |
msms PMID:
26583031
doi
Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400081328 | Potato | extracellular | 93.12 | 97.39 |
| Solyc06g009790.2.1 | Tomato | extracellular | 73.75 | 77.46 |
| VIT_07s0005g00890.t01 | Wine grape | extracellular | 64.58 | 64.99 |
| KRH69264 | Soybean | extracellular | 57.71 | 60.88 |
| CDY33922 | Canola | extracellular | 55.42 | 59.91 |
| KRG96478 | Soybean | endoplasmic reticulum, extracellular | 59.79 | 59.54 |
| GSMUA_Achr5P00100_001 | Banana | cytosol, extracellular, plastid | 52.29 | 59.48 |
| KRH31843 | Soybean | extracellular | 56.46 | 59.43 |
| Bra037429.1-P | Field mustard | extracellular | 54.79 | 59.23 |
| Os12t0554800-01 | Rice | cytosol, extracellular | 52.08 | 58.96 |
| AT5G49215.1 | Thale cress | extracellular, vacuole | 54.79 | 58.57 |
| CDX92101 | Canola | extracellular, golgi | 54.79 | 57.8 |
| Bra022182.1-P | Field mustard | extracellular, golgi | 54.38 | 57.62 |
| AT3G16850.1 | Thale cress | vacuole | 54.58 | 57.58 |
| CDY08036 | Canola | cytosol, nucleus, vacuole | 45.21 | 57.56 |
| AT3G06770.5 | Thale cress | extracellular | 53.33 | 57.27 |
| CDX82390 | Canola | extracellular | 53.54 | 57.24 |
| Bra001642.1-P | Field mustard | vacuole | 53.75 | 57.21 |
| KRH68221 | Soybean | extracellular | 58.96 | 56.94 |
| CDY54633 | Canola | extracellular | 53.12 | 56.92 |
| CDX74085 | Canola | cytoskeleton, cytosol, vacuole | 45.0 | 56.84 |
| TraesCS5B01G097100.2 | Wheat | extracellular | 53.12 | 56.79 |
| CDX95899 | Canola | extracellular | 53.54 | 56.73 |
| Bra020656.1-P | Field mustard | extracellular, plasma membrane | 55.42 | 56.6 |
| TraesCS5D01G102900.1 | Wheat | unclear | 52.92 | 56.57 |
| CDY56436 | Canola | extracellular, vacuole | 55.21 | 55.91 |
| TraesCS4D01G146700.1 | Wheat | extracellular, golgi, vacuole | 52.5 | 55.14 |
| CDY05643 | Canola | extracellular, plasma membrane, plastid | 54.79 | 55.02 |
| Bra001215.1-P | Field mustard | extracellular | 51.46 | 55.01 |
| KXG29050 | Sorghum | extracellular | 51.67 | 54.99 |
| TraesCS4B01G144700.2 | Wheat | extracellular, golgi, vacuole | 52.08 | 54.7 |
| TraesCS4A01G168800.1 | Wheat | extracellular, golgi, vacuole | 51.67 | 54.27 |
| Os11t0658800-01 | Rice | extracellular | 50.62 | 54.12 |
| TraesCS5A01G090800.2 | Wheat | extracellular, golgi, mitochondrion, plastid | 52.92 | 53.59 |
| Zm00001d023813_P001 | Maize | extracellular, vacuole | 51.04 | 53.15 |
| CDX86247 | Canola | plasma membrane, plastid | 55.21 | 52.89 |
| GSMUA_Achr11P... | Banana | extracellular, vacuole | 47.71 | 51.46 |
| HORVU5Hr1G023800.7 | Barley | plastid | 53.96 | 50.49 |
| Zm00001d048696_P001 | Maize | extracellular | 50.21 | 48.79 |
| Solyc01g094970.2.1 | Tomato | extracellular | 39.38 | 46.44 |
| GSMUA_Achr11P... | Banana | extracellular | 51.67 | 45.17 |
| Solyc08g082170.2.1 | Tomato | nucleus | 42.92 | 44.11 |
| Solyc08g081480.2.1 | Tomato | extracellular | 43.75 | 43.48 |
| Solyc03g007950.2.1 | Tomato | extracellular | 40.42 | 41.54 |
| Solyc05g049980.2.1 | Tomato | extracellular | 41.88 | 41.36 |
| Solyc06g060170.2.1 | Tomato | cytosol, golgi, plasma membrane | 41.67 | 40.98 |
| Solyc03g117750.2.1 | Tomato | extracellular, golgi | 37.92 | 37.37 |
| GSMUA_Achr11P... | Banana | cytosol | 51.04 | 37.01 |
| Solyc07g042160.2.1 | Tomato | nucleus | 37.92 | 36.84 |
| Solyc12g009210.1.1 | Tomato | nucleus | 36.67 | 35.56 |
| Solyc06g030520.1.1 | Tomato | cytosol | 6.67 | 28.07 |
| Solyc03g051770.2.1 | Tomato | cytosol | 12.29 | 18.73 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 |
| GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0016798 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | UniProt:K4CVC3 |
| PFAM:PF00295 | PANTHER:PTHR31339 | PANTHER:PTHR31339:SF5 | InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence |
| SMART:SM00710 | SUPFAM:SSF51126 | EnsemblPlantsGene:Solyc09g075460.2 | EnsemblPlants:Solyc09g075460.2.1 | UniParc:UPI000276BB5F | SEG:seg |
Description
No Description!
Coordinates
chr9:+:67167056..67171026
Molecular Weight (calculated)
52041.6 Da
IEP (calculated)
5.403
GRAVY (calculated)
-0.005
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVLSFFGEE GVGGSRFVNV TMSEKNTIMK RLAVLLLLLV FNHCIVQSEA EFEGECKFNK HLKPRPHSVS VLDFGAVGDG KTINTVAFQN AIFYLKSFAD
101: KGGAQLYVPA GKWLTRSINL TSHLTLFLEK DAVILASEDF DHWDVVEALP SYGRSIEAQY GRYRSLISGN NLTDVVITGN NGTIDGQGSI WWEKFNSHSL
201: NYTRPHLVEF VSSSNVVISN LTLLNAPGWN IRPAYCSNVV IQNLTVYTPQ DSPFTNGIVP DSSEHVCIEN SNISMGYDAI VLKSGWDEYG ISYGKPTSNV
301: HIRRVRLQSA AGAGVAFGSE MSGGISDVLV ELSALHDSLY GIELKTARGR GGYIKDILIS NVVMDNLQVG IKATGYSDTH PDEKYDPSLL PTVSGITFKD
401: IVGTNISIAG NFTGLSESPF TSICLSNISI SISSDPSTPW LCSNISGSSK NASPEPCPEL QGSFSSCFAL PNPYTEVAVL
101: KGGAQLYVPA GKWLTRSINL TSHLTLFLEK DAVILASEDF DHWDVVEALP SYGRSIEAQY GRYRSLISGN NLTDVVITGN NGTIDGQGSI WWEKFNSHSL
201: NYTRPHLVEF VSSSNVVISN LTLLNAPGWN IRPAYCSNVV IQNLTVYTPQ DSPFTNGIVP DSSEHVCIEN SNISMGYDAI VLKSGWDEYG ISYGKPTSNV
301: HIRRVRLQSA AGAGVAFGSE MSGGISDVLV ELSALHDSLY GIELKTARGR GGYIKDILIS NVVMDNLQVG IKATGYSDTH PDEKYDPSLL PTVSGITFKD
401: IVGTNISIAG NFTGLSESPF TSICLSNISI SISSDPSTPW LCSNISGSSK NASPEPCPEL QGSFSSCFAL PNPYTEVAVL
001: MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C86]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.