Factsheet for TraesCS5D01G102900.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G097100.2	Wheat	extracellular	97.33	97.33
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	98.44	93.25
Os12t0554800-01	Rice	cytosol, extracellular	79.51	84.2
HORVU5Hr1G023800.7	Barley	plastid	94.21	82.46
Zm00001d023813_P001	Maize	extracellular, vacuole	76.17	74.19
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	74.61	73.3
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	62.58	66.59
GSMUA_Achr11P...	Banana	extracellular, vacuole	58.13	58.65
KRH37050	Soybean	extracellular, vacuole	57.91	57.52
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	57.46	56.7
VIT_07s0005g00890.t01	Wine grape	extracellular	59.24	55.77
PGSC0003DMT400018848	Potato	extracellular	56.57	55.58
KRH02302	Soybean	extracellular	55.46	55.46
CDY33922	Canola	extracellular	54.79	55.41
Solyc06g009790.2.1	Tomato	extracellular	56.35	55.36
KRH50791	Soybean	extracellular	55.01	55.01
KRH12027	Soybean	extracellular, vacuole	57.68	54.99
PGSC0003DMT400081328	Potato	extracellular	56.12	54.9
AT3G16850.1	Thale cress	vacuole	55.46	54.73
Bra037429.1-P	Field mustard	extracellular	53.9	54.5
CDX74085	Canola	cytoskeleton, cytosol, vacuole	45.66	53.95
AT5G49215.1	Thale cress	extracellular, vacuole	53.9	53.9
KRH31843	Soybean	extracellular	54.57	53.73
Bra022182.1-P	Field mustard	extracellular, golgi	54.12	53.64
CDX92101	Canola	extracellular, golgi	54.12	53.41
KRH69264	Soybean	extracellular	54.12	53.41
CDY08036	Canola	cytosol, nucleus, vacuole	44.77	53.32
CDX95899	Canola	extracellular	53.67	53.2
CDY54633	Canola	extracellular	53.01	53.12
GSMUA_Achr11P...	Banana	extracellular	64.81	53.01
Solyc09g075460.2.1	Tomato	extracellular	56.57	52.92
CDX82390	Canola	extracellular	52.78	52.78
Bra001642.1-P	Field mustard	vacuole	53.01	52.77
KRG96478	Soybean	endoplasmic reticulum, extracellular	56.57	52.7
VIT_05s0077g01740.t01	Wine grape	nucleus	27.62	52.54
Bra020656.1-P	Field mustard	extracellular, plasma membrane	54.79	52.34
KRH68221	Soybean	extracellular	57.46	51.91
CDY56436	Canola	extracellular, vacuole	54.57	51.69
AT3G06770.5	Thale cress	extracellular	51.22	51.45
Bra001215.1-P	Field mustard	extracellular	51.45	51.45
CDY05643	Canola	extracellular, plasma membrane, plastid	54.34	51.05
CDX86247	Canola	plasma membrane, plastid	54.12	48.5
TraesCS3D01G230000.1	Wheat	extracellular	43.21	43.11
TraesCS5D01G513600.1	Wheat	plastid	50.78	42.94
GSMUA_Achr11P...	Banana	cytosol	62.81	42.6
TraesCS7D01G320900.1	Wheat	plastid	42.98	39.79
TraesCS7D01G016300.2	Wheat	extracellular	40.76	37.42
TraesCS6D01G320600.1	Wheat	mitochondrion	40.09	36.36
TraesCS5D01G219200.1	Wheat	plastid	38.53	32.58
TraesCS3D01G387300.1	Wheat	unclear	22.05	21.81
TraesCS5D01G271900.1	Wheat	extracellular, plasma membrane, vacuole	21.83	21.44

Protein Annotations

EnsemblPlants:TraesCS5D01G102900.1	EnsemblPlantsGene:TraesCS5D01G102900	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF11	PFAM:PF00295
SEG:seg	SignalP:SignalP-noTM	SMART:SM00710	SUPFAM:SSF51126	MapMan:50.3.2	:

Description

No Description!

Coordinates

chr5D:-:116171785..116174946

Molecular Weight (calculated)

48199.5 Da

IEP (calculated)

4.875

GRAVY (calculated)

0.031

Length

449 amino acids

Sequence
(BLAST)

001: MASLVVLASL LAVIGLAQGE AQCARYSGRP RPHSVTITEF GAVGDGLTVN TVPFQNAIFY LRSFADKGGA QLYVPKGRWL TGSFNLTSHL TLFLEKDAVI
101: IGTEDVTQWP IVEPLPSYGQ GIDLPGARHR SLINGHNVTD VIITGNSGIV DGQGLIWWNW FRSNKLNYSR PHLVEFEDSE EIVISNLTFL DSPAWGIHPV
201: YCSNVTIRNV TIETGLDAPL TNGIVPDSCS NMCIEDSRIS VGHDAISLKS GWDNYGITFG RPTSDIHISR VDLQASLGAA LAFGSEMSGG ISDVHVDHLH
301: IHGSSKGISF RTAPGRGGYI RDAIVSDVQM EDVHVAIEFT GDWSSHPDEH FDLSALPEIS GITLKDMVGK NISFAGVLSG IDGDPFTNIC LSNINFTIAD
401: SAHSASWSCS NISGYSESVF PEACSDLHSQ SSNSSICSST LSYHALATA

Best Arabidopsis Sequence Match ( AT5G49215.2 )
(BLAST)

001: MPVALVLLLT LSSVILINGR SYGVGNICDR GRRPSERPHS VKITDFGAVG DGKTLNTLAF QNAVFYLKSF ADKGGAQLYV PPGRWLTGSF NLTSHLTLFL
101: EKDAVILASQ DPSHWQVTDA LPSYGRGIDL PGKRYMSLIN GDMLHDVVVT GDNGTIDGQG LVWWDRFNSH SLEYSRPHLV EFVSAENVIV SNLTFLNAPA
201: YTIHSVYCRN LYIHRVTANT CPESPYTIGI VPDSSENVCI QESSINMGYD AISLKSGCDE YGLSYARPTA NVQIRNVYLR AASGSSISFG SEMSGGISDV
301: EVSDAHIHNS LSGIAFRTTN GRGGYIKEID ISNIHMVNVG TAFLANGSFG THPDSGFDEN AYPLVSHIRL HDIVGENIST AGYFFGTKES PFTSILLSNI
401: SLSIKNSASP ADSWQCSYVD GSSEFVVPEP CLELKSFDSY YGRAEAL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RX04]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.