Factsheet for Bra022182.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92101	Canola	extracellular, golgi	98.45	98.02
Bra001642.1-P	Field mustard	vacuole	87.86	88.25
AT3G16850.1	Thale cress	vacuole	86.75	86.37
Bra037429.1-P	Field mustard	extracellular	59.6	60.81
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	60.71	60.44
KRH37050	Soybean	extracellular, vacuole	59.6	59.73
Bra001215.1-P	Field mustard	extracellular	58.5	59.02
KRH50791	Soybean	extracellular	58.06	58.57
KRH02302	Soybean	extracellular	57.84	58.35
Bra020656.1-P	Field mustard	extracellular, plasma membrane	59.6	57.45
GSMUA_Achr5P00100_001	Banana	cytosol, extracellular, plastid	53.42	57.35
PGSC0003DMT400018848	Potato	extracellular	57.84	57.33
KRH12027	Soybean	extracellular, vacuole	59.6	57.32
Solyc06g009790.2.1	Tomato	extracellular	57.4	56.89
PGSC0003DMT400081328	Potato	extracellular	57.62	56.86
Os12t0554800-01	Rice	cytosol, extracellular	52.98	56.6
Zm00001d023813_P001	Maize	extracellular, vacuole	55.85	54.88
TraesCS5B01G097100.2	Wheat	extracellular	54.08	54.57
Solyc09g075460.2.1	Tomato	extracellular	57.62	54.38
TraesCS5D01G102900.1	Wheat	unclear	53.64	54.12
Os11t0658800-01	Rice	extracellular	53.2	53.67
KXG29050	Sorghum	extracellular	53.42	53.66
TraesCS4D01G146700.1	Wheat	extracellular, golgi, vacuole	53.42	52.95
TraesCS4B01G144700.2	Wheat	extracellular, golgi, vacuole	52.76	52.3
TraesCS4A01G168800.1	Wheat	extracellular, golgi, vacuole	52.32	51.86
VIT_05s0077g01740.t01	Wine grape	nucleus	26.93	51.69
TraesCS5A01G090800.2	Wheat	extracellular, golgi, mitochondrion, plastid	53.86	51.48
GSMUA_Achr11P...	Banana	extracellular, vacuole	48.79	49.66
Zm00001d048696_P001	Maize	extracellular	51.88	47.57
HORVU5Hr1G023800.7	Barley	plastid	53.86	47.56
Bra003485.1-P	Field mustard	extracellular, golgi	47.46	46.94
Bra007662.1-P	Field mustard	extracellular, plasma membrane	47.02	46.3
Bra013734.1-P	Field mustard	extracellular, vacuole	45.03	45.95
Bra028511.1-P	Field mustard	extracellular	44.81	45.41
Bra019264.1-P	Field mustard	extracellular, vacuole	44.81	45.01
GSMUA_Achr11P...	Banana	extracellular	53.86	44.44
Bra011440.1-P	Field mustard	extracellular	45.47	43.46
Bra037005.1-P	Field mustard	extracellular	44.37	42.14
Bra018004.1-P	Field mustard	cytosol	39.74	41.19
Bra018023.1-P	Field mustard	extracellular	42.38	40.94
Bra007609.1-P	Field mustard	extracellular	42.38	40.85
Bra019299.1-P	Field mustard	extracellular, plasma membrane	41.94	38.54
Bra013697.1-P	Field mustard	extracellular, plasma membrane	41.94	38.54
GSMUA_Achr11P...	Banana	cytosol	52.98	36.25
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	39.51	35.31
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	38.85	35.06
Bra032138.1-P	Field mustard	cytosol	41.5	23.5
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	21.63	20.5
Bra007626.1-P	Field mustard	mitochondrion	24.72	19.28

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra022182	EnsemblPlants:Bra022182.1	EnsemblPlants:Bra022182.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4E085	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF15
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI0002547727	:	:	:	:	:

Description

AT3G16850 (E=1e-235) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA05:-:19234715..19236368

Molecular Weight (calculated)

48881.8 Da

IEP (calculated)

6.007

GRAVY (calculated)

-0.002

Length

453 amino acids

Sequence
(BLAST)

001: MQVALVWLLA FTNLLLIRVE SNNAVCKKTF KLDPRPHSVS ILEFGAVGDG KFLNTIAFQN AIFYLKSFAD KGGAQLYVPP GKWLTGSFNL TSHLTLFLEK
101: GATILASPDP SHWDIVSPLP SYGRGIELPG KRYRSLINGD NLQDVVITGD NGTFDGQGAA WWEWLESGTL NYSRPHIIEF VSSKNILISN LTFLNAPSVN
201: IHPVYCSHVH IKKVLIETSV DSPYVLGVVP DSSDNVCIED STINVGHDTV SLKSGWDQYG INYGRPTTAV HIRNLVLKSP TGAGISFGSE MSGGISDVTV
301: EHLTIHSSRV GVAFRTTRGR GGYIRNITIS GVVLSGVDTA IVADGHTGAH ADDKYDRDAL PVVTRIVLRN FTGDGIGLAG NFTGIGESPF TSICLKDIHL
401: QTSSESWVCS NVSGYAEDVS PEPCEELMSS PSACFAGGRI YGGETAGESY YSW

Best Arabidopsis Sequence Match ( AT3G16850.1 )
(BLAST)

001: MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE
101: KGATILASPD PSHWDVVSPL PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE FVSSKHILIS NLTFLNAPAI
201: NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301: VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH
401: LQTRSEESWI CSNVSGFSDD VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C86]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.