Factsheet for Bra016521.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, extracellular

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96676	Canola	extracellular, golgi, plastid	99.21	99.21
AT1G19170.1	Thale cress	cytosol, extracellular, mitochondrion, peroxisome	90.14	90.32
KRH19342	Soybean	endoplasmic reticulum	72.78	75.15
KRH02590	Soybean	extracellular, golgi, mitochondrion, plastid	72.78	75.0
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	71.79	73.83
KRH12568	Soybean	plastid	70.02	72.6
KRH37525	Soybean	extracellular, plasma membrane	70.02	71.86
GSMUA_Achr5P22120_001	Banana	extracellular	69.63	71.75
GSMUA_Achr9P18190_001	Banana	mitochondrion	69.43	71.69
GSMUA_Achr3P10280_001	Banana	mitochondrion	67.26	71.19
PGSC0003DMT400007594	Potato	extracellular	68.44	70.1
Solyc12g009210.1.1	Tomato	nucleus	68.05	69.7
Solyc07g042160.2.1	Tomato	nucleus	67.26	69.03
TraesCS6B01G371200.2	Wheat	mitochondrion	67.26	68.89
Os02t0781000-01	Rice	extracellular	38.46	68.42
EES05901	Sorghum	extracellular, golgi	67.46	68.4
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	67.65	68.33
TraesCS6A01G340000.1	Wheat	mitochondrion	66.67	68.28
TraesCS6D01G320600.1	Wheat	mitochondrion	66.67	68.28
Zm00001d052103_P001	Maize	plasma membrane	65.88	67.47
GSMUA_Achr11P...	Banana	mitochondrion	62.72	64.77
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	61.93	62.93
Bra013734.1-P	Field mustard	extracellular, vacuole	38.26	43.69
Bra011440.1-P	Field mustard	extracellular	40.43	43.25
Bra028511.1-P	Field mustard	extracellular	38.07	43.18
Bra037005.1-P	Field mustard	extracellular	40.43	42.98
Bra019264.1-P	Field mustard	extracellular, vacuole	38.07	42.79
Bra018023.1-P	Field mustard	extracellular	38.26	41.36
Bra018004.1-P	Field mustard	cytosol	34.32	39.82
Bra022182.1-P	Field mustard	extracellular, golgi	35.31	39.51
Bra003485.1-P	Field mustard	extracellular, golgi	35.5	39.3
Bra007662.1-P	Field mustard	extracellular, plasma membrane	35.5	39.13
Bra001642.1-P	Field mustard	vacuole	34.52	38.8
Bra019299.1-P	Field mustard	extracellular, plasma membrane	36.69	37.73
Bra007609.1-P	Field mustard	extracellular	34.91	37.66
Bra013697.1-P	Field mustard	extracellular, plasma membrane	36.49	37.53
Bra037429.1-P	Field mustard	extracellular	32.54	37.16
Bra001215.1-P	Field mustard	extracellular	32.74	36.97
Bra020656.1-P	Field mustard	extracellular, plasma membrane	33.92	36.6
Bra032138.1-P	Field mustard	cytosol	35.11	22.25
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	20.91	22.18
Bra007626.1-P	Field mustard	mitochondrion	19.53	17.04

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra016521	EnsemblPlants:Bra016521.1	EnsemblPlants:Bra016521.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4DJ43	PFAM:PF00295
PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI0001B63BAD	SEG:seg	:	:

Description

AT1G19170 (E=7e-241) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA08:-:18862473..18864909

Molecular Weight (calculated)

56164.5 Da

IEP (calculated)

9.428

GRAVY (calculated)

-0.165

Length

507 amino acids

Sequence
(BLAST)

001: MVETLLPSRF QSHLQKLDPK RRLLASTIAS HKTLLFAFLW IAAFASVFLW QRSSYIGGYV VGPVAGGRFT VFGKAKPLRP VPRLRPAVFD LKEFGGVGDG
101: VTVNTEAFER AVVEISKLGG GGGGQLNVPP GRWLTAPFNL TSRMTLFLAE DCEILGVEDE KFWTLMPPLP SYGYGRERPG PRYGSLIHGQ NLKDVVITGH
201: NGTINGQGQS WWKKHQRRLL NNTRGPLVQI MWSSDIVIAN VTLRDSPFWT LHPYDCKNVT IRNVTILAPV TGAPNTDGID PDSCEDMVIE DCYISTGDDA
301: IAIKSGWDQF GIAYGRPSTN ILIRNLIVRS VISAGVSIGS EMSGGISNVT IENLLIWNSR RGVRIKTAQG RGGYIKNITY KNVTLDNVRV GIVIKTDYNE
401: HADDNYDRKA YPTLSGFSFS GIHGQGVRVP VRIHGSEQIP VRNVTFRDMS VGLTYKKKHI FQCSFVKGRV IGSIFPRPCE NFDVYDEEGR LVKPATESTV
501: PDIDYDI

Best Arabidopsis Sequence Match ( AT1G19170.1 )
(BLAST)

001: MVENLFPSRF QFHLQRLDPK RRLTSLLASH KTLFTFLWIT AFGSVFLWQR TAYIEGGSGT GPVGGKFTIF GKIKPIQPIP RLRPVVFDLK DFGGVGDGFT
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE17]
SUBAcon: [mitochondrion,peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.