CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 3
plasma membrane 3
endoplasmic reticulum 2
vacuole 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052103_P001	Maize	plasma membrane	95.2	96.16
Os02t0781000-01	Rice	extracellular	49.8	87.37
TraesCS6B01G371200.2	Wheat	mitochondrion	85.0	85.86
TraesCS6D01G320600.1	Wheat	mitochondrion	84.8	85.66
TraesCS6A01G340000.1	Wheat	mitochondrion	84.6	85.45
KRH19342	Soybean	endoplasmic reticulum	68.0	69.25
KRH02590	Soybean	extracellular, golgi, mitochondrion, plastid	67.4	68.5
CDX96676	Canola	extracellular, golgi, plastid	68.8	67.85
CDX83782	Canola	extracellular, golgi, plastid	68.6	67.65
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	68.4	67.46
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	66.4	67.34
PGSC0003DMT400007594	Potato	extracellular	66.4	67.07
AT1G19170.1	Thale cress	cytosol, extracellular, mitochondrion, peroxisome	67.6	66.8
Solyc12g009210.1.1	Tomato	nucleus	66.0	66.67
Solyc07g042160.2.1	Tomato	nucleus	64.2	64.98
AT3G42950.1	Thale cress	extracellular, golgi	62.8	64.88
KRH12568	Soybean	plastid	63.4	64.83
KRH37525	Soybean	extracellular, plasma membrane	63.8	64.57
CDY27797	Canola	extracellular, mitochondrion, plastid	64.2	64.07
GSMUA_Achr11P...	Banana	mitochondrion	62.8	63.95
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	64.0	63.74
CDY41934	Canola	extracellular, mitochondrion, plastid	64.0	63.74
Solyc03g117750.2.1	Tomato	extracellular, golgi	61.6	63.24
PGSC0003DMT400036866	Potato	extracellular, golgi	61.0	62.63
CDY53228	Canola	extracellular	14.0	62.5
KRH55874	Soybean	cytosol	8.2	62.12
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	61.4	61.52
EER96790	Sorghum	plastid	63.0	60.81
EES04867	Sorghum	extracellular, plasma membrane	42.2	47.1
EES01085	Sorghum	extracellular	40.0	44.74
EES20030	Sorghum	extracellular	38.0	43.28
EER90587	Sorghum	extracellular	39.4	41.47
EER95599	Sorghum	extracellular	38.0	41.04
KXG29050	Sorghum	extracellular	37.0	41.02
EER96131	Sorghum	extracellular, mitochondrion	40.8	40.88
KXG24195	Sorghum	endoplasmic reticulum, extracellular, plasma membrane, plastid	40.6	40.85
EER89047	Sorghum	extracellular, vacuole	38.2	38.59
EER99085	Sorghum	extracellular, plasma membrane	24.0	25.97

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EntrezGene:8081943	UniProt:C5XTN3	EnsemblPlants:EES05901	ProteinID:EES05901
ProteinID:EES05901.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334
ProteinID:OQU85828.1	ProteinID:OQU85829.1	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	EnsemblPlantsGene:SORBI_3004G319600	SUPFAM:SSF51126	unigene:Sbi.17827
TMHMM:TMhelix	UniParc:UPI0001A85A4F	RefSeq:XP_002452925.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:65461109..65465192

Molecular Weight (calculated)

54457.0 Da

IEP (calculated)

9.442

GRAVY (calculated)

-0.155

Length

500 amino acids

Sequence
(BLAST)

001: MVETGGGRLH QRRGAVAFVA ANKALLAAAW VVGFALVFLW QSASMSFGSA GAGGAAGGGF LRLLSAPPPP PRPAPRLRPT AYNLTDFGAV GDGRAVNTEA
101: FERAVETIAA LAERGGGQLN VPPGRWLTAP FNLTSHMTLF LAEGAEILGI TDEKYWPLMP ALPSYGYGRE RKGPRFGSLI HGQNLKDVVI TGHNGSINGQ
201: GEVWWMKHRR RILNNTRPPL VQLMWSKDII IANITLRNSP FWHLHPYDCT NVTVSNVTIL SPVSGAPNTD GIDPDSSQDV LIENCYISVG DDAIAIKSGW
301: DQYGIAYGRP SSNISIRNVN ARSLVSAGIS IGSEMSGGVA NVTVENVRIW ESRRGVRIKT ATGRGGYIRN ISYRNITFDN VRAGIVIKVD YNEHADDGYD
401: RTAFPDITSI SFKGIHGRGV RVPVRAHGSD VIPIRDISFQ DMSVGISYKK KHIFQCSYVE GRVVRPVFPK PCENLDIYDE QGQLVKRAVA LNSTELDYDI

Best Arabidopsis Sequence Match ( AT1G19170.1 )
(BLAST)

001: MVENLFPSRF QFHLQRLDPK RRLTSLLASH KTLFTFLWIT AFGSVFLWQR TAYIEGGSGT GPVGGKFTIF GKIKPIQPIP RLRPVVFDLK DFGGVGDGFT
101: LNTEAFERAV ISISKLGGSS GGGQLNVPPG RWLTAPFNLT SHMTLFLAED SEILGVEDEK YWPLMPPLPS YGYGRERPGP RYGSLIHGQN LKDIVITGHN
201: GTINGQGQSW WKKHQRRLLN YTRGPLVQIM WSSDIVIANI TMRDSPFWTL HPYDCKNVTI RNVTILAPVT GAPNTDGIDP DSCEDMVIED CYISTGDDAI
301: AIKSGWDQFG IAYGRPSTNI LIRNLVVRSV ISAGVSIGSE MSGGISNVTI ENLLIWNSRR GIRIKTAPGR GGYIRNITYK NLTLDNVRVG IVIKTDYNEH
401: ADDNYDRKAY PILSGFSFAG IHGQGVRVPV RIHGSEQIPV RNVTFRDMSV GLTYKKKHIF QCSFVKGRVF GSIFPRPCEN FDVYDEEGRL VKPAAESNVA
501: DIDYDI

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE17]
SUBAcon: [mitochondrion,peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.