CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular

Predictor Summary:

plastid 4
extracellular 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	99.4	99.4
CDY27797	Canola	extracellular, mitochondrion, plastid	99.2	99.4
AT3G42950.1	Thale cress	extracellular, golgi	86.85	90.08
CDY53228	Canola	extracellular	19.52	87.5
GSMUA_Achr3P10280_001	Banana	mitochondrion	67.33	70.56
GSMUA_Achr9P18190_001	Banana	mitochondrion	68.73	70.26
GSMUA_Achr5P22120_001	Banana	extracellular	67.93	69.31
CDX83782	Canola	extracellular, golgi, plastid	68.33	67.65
CDX96676	Canola	extracellular, golgi, plastid	68.33	67.65
Solyc03g117750.2.1	Tomato	extracellular, golgi	64.34	66.32
PGSC0003DMT400036866	Potato	extracellular, golgi	64.34	66.32
Os02t0781000-01	Rice	extracellular	37.65	66.32
Zm00001d052103_P001	Maize	plasma membrane	63.35	64.24
TraesCS6B01G371200.2	Wheat	mitochondrion	63.35	64.24
EES05901	Sorghum	extracellular, golgi	63.74	64.0
TraesCS6A01G340000.1	Wheat	mitochondrion	62.75	63.64
TraesCS6D01G320600.1	Wheat	mitochondrion	62.35	63.23
GSMUA_Achr11P...	Banana	mitochondrion	61.55	62.93
GSMUA_Achr8P23620_001	Banana	extracellular, golgi, mitochondrion, plasma membrane	60.96	61.32
CDY69951	Canola	cytosol	12.95	51.59
CDY47619	Canola	extracellular, vacuole	38.45	43.47
CDY03516	Canola	extracellular, vacuole	38.25	43.24
CDY10898	Canola	cytosol	4.38	43.14
CDX94222	Canola	extracellular	38.65	43.02
CDY10970	Canola	extracellular, vacuole	38.45	42.79
CDY13383	Canola	extracellular	37.65	42.47
CDX67513	Canola	extracellular	37.65	42.28
CDY05907	Canola	cytosol	35.86	41.1
CDX68976	Canola	extracellular	38.25	40.76
CDX75352	Canola	extracellular	38.05	40.47
CDY46115	Canola	extracellular	37.85	40.17
CDX72404	Canola	extracellular	37.85	40.17
CDY08113	Canola	extracellular	36.45	40.13
CDY33922	Canola	extracellular	35.26	39.86
CDY70893	Canola	cytosol	28.29	39.66
CDY39678	Canola	extracellular	37.65	39.54
CDY05885	Canola	extracellular	36.45	39.44
CDY20264	Canola	extracellular	37.45	39.33
CDX67875	Canola	extracellular, golgi	35.86	39.3
CDY25090	Canola	extracellular, golgi	35.66	39.08
CDX92101	Canola	extracellular, golgi	35.26	38.9
CDX95899	Canola	extracellular	34.86	38.63
CDY69255	Canola	cytosol	28.88	38.56
CDY11403	Canola	extracellular, plasma membrane	35.26	38.48
CDY48913	Canola	extracellular	35.86	38.22
CDY65355	Canola	extracellular	35.86	38.14
CDX76617	Canola	extracellular, plasma membrane	34.86	38.04
CDY08036	Canola	cytosol, nucleus, vacuole	28.49	37.93
CDX74085	Canola	cytoskeleton, cytosol, vacuole	28.69	37.89
CDY44105	Canola	cytosol, nucleus, plasma membrane	34.06	37.83
CDY54633	Canola	extracellular	33.67	37.72
CDX82390	Canola	extracellular	33.67	37.64
CDY08095	Canola	extracellular, plasma membrane	37.05	37.58
CDY05643	Canola	extracellular, plasma membrane, plastid	34.26	35.98
CDY56436	Canola	extracellular, vacuole	33.67	35.65
CDY10897	Canola	cytosol, extracellular, peroxisome	16.33	34.31
CDX86247	Canola	plasma membrane, plastid	33.86	33.93
CDX71719	Canola	mitochondrion	9.76	29.88
CDY12962	Canola	extracellular, plasma membrane, vacuole	21.91	23.01
CDY02392	Canola	extracellular, plasma membrane, vacuole	21.91	23.01
CDY11375	Canola	mitochondrion	18.13	17.95
CDY10899	Canola	cytosol	2.79	14.58

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:A0A078HX31	UniProt:A0A078HX31	EnsemblPlants:CDY41934	ProteinID:CDY41934
ProteinID:CDY41934.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSBRNA2T00073919001	InterPro:Glyco_hydro_28
InterPro:IPR012334	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF21	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI0001B63BB2	SEG:seg

Description

BnaC05g46700DBnaC05g46700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HX31]

Coordinates

chrLK032510:-:232801..236190

Molecular Weight (calculated)

55721.3 Da

IEP (calculated)

8.262

GRAVY (calculated)

-0.199

Length

502 amino acids

Sequence
(BLAST)

001: MVEPLPITRR RFLSSHKSLV TVFWIAAFAS LFIWQSRGRG GGGGASLYRV NGSLSSVFWW TATTTTTATS ADAGEFPRLR PVSFNLTDFG AVGDGVTVNT
101: EAFERAVYAI SKLSKKGGGQ LNVPPGRWLT APFNLTSFMT LFLAEDAEIL AVQDETLWPL LPPLPSYGYG REHYGPRYGS FIHGQNLKDV VVTGNNGSIN
201: GQGVYWWKKY RSKLLNHTRG PLVQIMWSSD VVFANITLRD SPFWTLHPYD CKNVTITNMT ILAPVFEAPN TDGIDPDSCE DMLIENSYIS VGDDGIAIKS
301: GWDQYGTNYG RPSKNILIRN LIIRSMVSAG ISIGSEMSGG VSNITVENIL IWSSRRGVRI KTAPGRGGYV RDITFRNVTL DELRVGIVVK TDYNEHPDGG
401: FNPQAFPVLE NINYTGIYGQ GVRVPVRMQG SKEIPVKNVT FRDMSVGITY KKKHIFQCAY VQGRVIGTIF PSPCENLDRY DEQEQLVKQS DSQNATDIDY
501: EI

Best Arabidopsis Sequence Match ( AT3G42950.1 )
(BLAST)

001: MVRRFLSSHK SLITVFWIAT FASLFIWQFG GVSTNLYSGF SLFWSSSSTT TTVFSGGFPK LRPVVFNLTD FGAVGDGVTI NTEAFEKAIY KISKLAKKGG
101: GQLNVPPGRW LTAPFNLTSY MTLFLSENAE ILALQDEKYW SLLPPLPSYG YGREHHGPRY GSFIHGQNLR DVVVTGNNGS INGQGQTWWK KYRQKLLNHT
201: RGPLVQIMWS SDIVFANITL RDSPFWTLHP YDCKNVTITN MTILAPVFEA PNTDGIDPDS CEDMLIENSY ISVGDDGIAI KSGWDQYGTT YGKPSKNILI
301: RNLIIRSMVS AGISIGSEMS GGVSNITVEN ILIWSSRRGV RIKTAPGRGG YVRDITFRNV TLDELRVGIV IKTDYNEHPD GGFNPQAFPI LENINYTGIY
401: GQGVRVPVRI QGSKEIPVKN VTFRDMSVGI TYKKKHIFQC AYVEGRVIGT IFPAPCDNLD RYDEQERLVK QSDSQNATDI DYEI

Arabidopsis Description

AT3g42950/F18P9_110 [Source:UniProtKB/TrEMBL;Acc:Q9M1L0]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.