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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 1
  • extracellular 6
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY39678 Canola extracellular 99.58 99.58
AT2G23900.1 Thale cress extracellular 92.05 92.24
CDY05907 Canola cytosol 68.2 74.43
CDY08113 Canola extracellular 69.87 73.25
CDY05885 Canola extracellular 70.71 72.84
CDY69951 Canola cytosol 18.62 70.63
CDY10898 Canola cytosol 7.32 68.63
CDY08095 Canola extracellular, plasma membrane 70.92 68.48
KRG91587 Soybean cytosol, extracellular, plastid 32.64 63.93
CDY70893 Canola cytosol 47.7 63.69
KRH35240 Soybean extracellular 61.51 62.42
KRH35239 Soybean extracellular, plasma membrane, plastid 62.34 62.08
CDY69255 Canola cytosol 48.74 61.97
KRH35238 Soybean extracellular 59.0 60.52
KRH38380 Soybean extracellular 60.25 60.5
KRH08861 Soybean extracellular 59.2 59.33
Bra032138.1-P Field mustard cytosol 98.12 58.62
CDY65355 Canola extracellular 57.32 58.05
CDY48913 Canola extracellular 57.11 57.96
CDY44105 Canola cytosol, nucleus, plasma membrane 53.14 56.19
Solyc03g007950.2.1 Tomato extracellular 54.6 55.89
PGSC0003DMT400024595 Potato cytosol 53.35 53.46
VIT_16s0050g01120.t01 Wine grape cytosol 20.71 52.94
CDY10899 Canola cytosol 10.04 50.0
CDY53228 Canola extracellular 10.46 44.64
CDY47619 Canola extracellular, vacuole 40.17 43.24
CDY03516 Canola extracellular, vacuole 40.17 43.24
CDY10970 Canola extracellular, vacuole 39.96 42.35
CDX94222 Canola extracellular 39.96 42.35
CDX92101 Canola extracellular, golgi 39.75 41.76
CDY54633 Canola extracellular 39.12 41.74
CDY33922 Canola extracellular 38.7 41.67
CDX82390 Canola extracellular 39.12 41.65
CDX95899 Canola extracellular 39.12 41.28
CDY25090 Canola extracellular, golgi 39.54 41.27
CDX67875 Canola extracellular, golgi 39.54 41.27
CDY11403 Canola extracellular, plasma membrane 39.33 40.87
CDY46115 Canola extracellular 39.54 39.96
CDX75352 Canola extracellular 39.33 39.83
CDX76617 Canola extracellular, plasma membrane 38.28 39.78
CDX67513 Canola extracellular 37.03 39.6
CDX68976 Canola extracellular 38.91 39.49
CDY13383 Canola extracellular 36.61 39.33
CDX72404 Canola extracellular 38.7 39.11
CDY10897 Canola cytosol, extracellular, peroxisome 19.46 38.91
CDY56436 Canola extracellular, vacuole 38.28 38.61
CDY05643 Canola extracellular, plasma membrane, plastid 38.28 38.28
CDY08036 Canola cytosol, nucleus, vacuole 29.71 37.67
CDY27797 Canola extracellular, mitochondrion, plastid 39.33 37.52
CDY41934 Canola extracellular, mitochondrion, plastid 39.33 37.45
CDX74085 Canola cytoskeleton, cytosol, vacuole 29.5 37.11
CDX86247 Canola plasma membrane, plastid 38.49 36.73
CDX83782 Canola extracellular, golgi, plastid 37.45 35.31
CDX96676 Canola extracellular, golgi, plastid 37.24 35.11
CDX71719 Canola mitochondrion 11.51 33.54
VIT_16s0050g01110.t01 Wine grape extracellular, golgi 62.76 28.54
CDY12962 Canola extracellular, plasma membrane, vacuole 23.64 23.64
CDY02392 Canola extracellular, plasma membrane, vacuole 23.43 23.43
CDY11375 Canola mitochondrion 19.46 18.34
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078G4E6UniProt:A0A078G4E6EnsemblPlants:CDY20264ProteinID:CDY20264
ProteinID:CDY20264.1GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150
GO:GO:0008152GO:GO:0016787GO:GO:0016798EnsemblPlantsGene:GSBRNA2T00012167001InterPro:Glyco_hydro_28InterPro:IPR012334
PFAM:PF00295PANTHER:PTHR31339PANTHER:PTHR31339:SF17InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSUPFAM:SSF51126
UniParc:UPI0004EEF362SEG:seg::::
Description
BnaC04g36920DBnaC04g36920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4E6]
Coordinates
chrLK032105:+:78065..79967
Molecular Weight (calculated)
51775.3 Da
IEP (calculated)
8.138
GRAVY (calculated)
-0.032
Length
478 amino acids
Sequence
(BLAST)
001: MEFSLKPSAL KMTRTSFVIV VVLAICSFQM MESSPDLANK VKANNIQYDA INCRKHSAVI TEFGAVGDGK TSNTKAFKEA ITKLAPKAAD GGVQLIVPPG
101: KWLTGSFNLT SHFTLFIQKD ATILASQDES EYPVVAPLPS YGQGRDAAGP TFASLISGTN LTDVVITGNN GTINGQGKYW WVKYRSGGFK NITRPYTLEL
201: VFSKDVQISN ITIVDSPAWN IHPVYCTNVI VKGVTILAPI DSPNTDGINP DSCTNTLIED CFVVSGDDCI AVKSGWDQFG IKVGMPTQQL SIRRLTCISP
301: DSAGIALGSE MSGGIKDVRM EDITLLQTQS AIRIKTAVGR GGYVKDIFAR RFTMKTMKYV FWMSGAYNQH PASGYDPKAM PEITNINYRD MTADNVTQPA
401: RLDGFTNDPF TKICMSNINI ALAAEPKKLL WNCTAISGVS SKVTPKPCSL LPENAPVDCA FPVDKIPIES VVLNKCSA
Best Arabidopsis Sequence Match ( AT2G23900.1 )
(BLAST)
001: MEFSINPSTL KMIRTSFCIL VVLAISSFSM MEARDLASKG KTNIEYMALN CRKHTAVLTE FGAVGDGKTS NTKAFKEAIT KLAPKAADGG VQLIVPPGKW
101: LTGSFNLTSH FTLFIQKGAT ILASQDESEY PVVAPLPSYG QGRDAAGPTF ASLISGTNLT DVVITGNNGT INGQGKYWWV KYRSGGFKGI TRPYTIEIIF
201: SQNVQISNIT IIDSPAWNIH PVYCNNVIVK GVTILAPIDS PNTDGINPDS CTNTLIEDCY VVSGDDCIAV KSGWDQFGIK VGMPTQQLSI RRLTCISPDS
301: AGIALGSEMS GGIKDVRIED ITLLQTQSAI RIKTAVGRGG YVKDIFARRF TMKTMKYVFW MSGAYNQHPA SGFDPKAMPV ITNINYRDMT ADNVTQPARL
401: DGFKNDPFTK ICMSNIKIDL AAEPKKLLWN CTSISGVSSK VTPKPCSLLP EKGAPVDCAF PVDKIPIESV VLNKCSA
Arabidopsis Description
Glycoside hydrolase family 28 protein/polygalacturonase family protein [Source:UniProtKB/TrEMBL;Acc:Q1PF10]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.