Factsheet for PGSC0003DMT400024595

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007950.2.1	Tomato	extracellular	82.18	83.94
KRG91587	Soybean	cytosol, extracellular, plastid	36.48	71.31
PGSC0003DMT400094734	Potato	cytosol	14.26	64.76
KRH35238	Soybean	extracellular	62.89	64.38
KRH35240	Soybean	extracellular	62.89	63.69
KRH35239	Soybean	extracellular, plasma membrane, plastid	63.1	62.71
PGSC0003DMT400032104	Potato	extracellular	62.68	61.9
PGSC0003DMT400000538	Potato	extracellular	59.54	59.79
KRH38380	Soybean	extracellular	59.54	59.66
KRH08861	Soybean	extracellular	59.33	59.33
PGSC0003DMT400055769	Potato	extracellular	58.7	58.7
AT3G48950.1	Thale cress	extracellular	56.81	57.78
CDY05885	Canola	extracellular	55.77	57.33
CDY05907	Canola	cytosol	52.62	57.31
Bra018004.1-P	Field mustard	cytosol	52.41	57.21
Bra018023.1-P	Field mustard	extracellular	55.97	56.93
CDY08113	Canola	extracellular	52.62	55.04
AT2G23900.1	Thale cress	extracellular	53.88	53.88
CDY08095	Canola	extracellular, plasma membrane	55.56	53.54
CDY20264	Canola	extracellular	53.46	53.35
CDY39678	Canola	extracellular	53.04	52.93
VIT_16s0050g01120.t01	Wine grape	cytosol	17.61	44.92
PGSC0003DMT400031687	Potato	extracellular	41.93	44.74
PGSC0003DMT400081328	Potato	extracellular	41.09	42.7
PGSC0003DMT400018848	Potato	extracellular	39.41	41.14
PGSC0003DMT400030711	Potato	extracellular, golgi, nucleus	38.99	38.27
PGSC0003DMT400036866	Potato	extracellular, golgi	38.99	38.19
PGSC0003DMT400007594	Potato	extracellular	39.62	38.18
Bra032138.1-P	Field mustard	cytosol	53.25	31.75
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	61.84	28.07
PGSC0003DMT400065330	Potato	nucleus	11.74	27.32
PGSC0003DMT400041391	Potato	cytosol	9.43	27.11
PGSC0003DMT400033674	Potato	extracellular, plasma membrane	22.85	22.9

Protein Annotations

EnsemblPlants:PGSC0003DMT400024595	EnsemblPlantsGene:PGSC0003DMG401009510	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28
InterPro:IPR012334	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF7	PFAM:PF00295
PGSC:PGSC0003DMG401009510	SUPFAM:SSF51126	UniParc:UPI0002958B2A	UniProt:M1AKE0	MapMan:50.3.2	:

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG401009510]

Coordinates

chr3:-:49763033..49771794

Molecular Weight (calculated)

51847.8 Da

IEP (calculated)

4.873

GRAVY (calculated)

-0.090

Length

477 amino acids

Sequence
(BLAST)

001: MSAPRWADLI DEEEKVSPLS VNSKLADSLI QSYETKVVGG TIAARLLIFV PERCSKEDFG GKGDGKTSNT EAFRKAIDEL SKFATDGGAQ LIVPPGKWLT
101: GPFNLTSKFT LYIHQDAVIL VSQDEAEWDL IPPLPSYGIG RDNPGPRFIS FIFGTNLTDV VITGGNGTID GQGQLWWTKF RQGQMKNTRP YLIEIMFSDH
201: IQISNLTLIN SPSWNVHPVY SSFVVIKGLT ILAPVDSPNT DGIDPDSCSN TRIEDCFIVS GDDCIAVKSG WDEYGIAFGK PTKHLIIRNL TCISPDSAVI
301: ALGSEMSGGI QDVRAENIAA ISSESGLRIK TAIGRGAYVK DVFVRGMTLQ TMKYTFWITG DYGSHPDDHY DPKALPVIQG INVKDVVAKN VTIAGKLAGI
401: DGDTFNGICI SNVAIELSEQ AKQLEWNCSN IKGVSSQVSP QPCALLPDKN IYCPFPTDTL PVDKIQFQTC AAATTMH

Best Arabidopsis Sequence Match ( AT4G23500.1 )
(BLAST)

001: MTSLSTAGYL LLLLLLPISY DGGFIGAADA EHDLRATDLH NHRHRRHRNH HRGEEFEYSA ISCRAYSASL DEFGAVGDGV TSNTAAFRDA VSQLSRFADY
101: GGSLLFVPAG RWLTGNFNLT SHFTLFLHRD AVILASQEES DYEVIEPLPS YGRGRDTDGG RFISLLFGSN LTDVVITGEN GTIDGQGEPW WGKFKRGELK
201: YTRPYLIEIM HSDGIQISNL TFLNSPSWHI HPVYSSNIYI QGLTILAPVT VPNTDGINPD SCTNTRIEDC YIVSGDDCIA VKSGWDQYGI NYGMPTKQLL
301: IRRLTCISPD SAVIALGSEM SGGIEDVRAE DIVAINSESG IRIKTAIGRG GYVKDVYVRG MTMMTMKYVF WMTGSYGSHP DDHYDPKALP VIQNINYQDM
401: VAENVTMPAQ LAGISGDQFT GICISNVTIT LSKKPKKVLW NCTDVSGYTS GVTPQPCQLL PEKQPGTVVP CNFPEDPIPI DEVKLQRCYS RRRNM

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O81746]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.