Factsheet for VIT_16s0050g01110.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 6
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91587	Soybean	cytosol, extracellular, plastid	16.65	71.72
VIT_13s0139g00110.t01	Wine grape	cytosol	6.37	69.79
VIT_00s2630g00010.t01	Wine grape	cytosol	4.28	68.18
KRH35240	Soybean	extracellular	30.45	67.94
AT3G48950.1	Thale cress	extracellular	30.26	67.8
KRH35239	Soybean	extracellular, plasma membrane, plastid	30.83	67.5
CDY05885	Canola	extracellular	29.31	66.38
Bra018023.1-P	Field mustard	extracellular	29.59	66.31
KRH35238	Soybean	extracellular	29.31	66.09
KRH38380	Soybean	extracellular	29.78	65.76
VIT_02s0025g00260.t01	Wine grape	extracellular	29.88	65.42
KRH08861	Soybean	extracellular	29.69	65.41
Solyc03g007950.2.1	Tomato	extracellular	28.92	65.1
AT2G23900.1	Thale cress	extracellular	29.12	64.15
Bra018004.1-P	Field mustard	cytosol	26.45	63.62
CDY05907	Canola	cytosol	26.36	63.24
CDY08095	Canola	extracellular, plasma membrane	29.59	62.83
CDY20264	Canola	extracellular	28.54	62.76
CDY39678	Canola	extracellular	28.54	62.76
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	28.54	62.63
CDY08113	Canola	extracellular	27.02	62.28
VIT_16s0050g01120.t01	Wine grape	cytosol	11.04	62.03
PGSC0003DMT400024595	Potato	cytosol	28.07	61.84
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	21.5	48.5
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	19.22	44.4
VIT_02s0025g01330.t01	Wine grape	extracellular	18.46	43.4
VIT_07s0005g00890.t01	Wine grape	extracellular	19.22	42.35
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	19.22	40.97
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	19.41	39.46
Bra032138.1-P	Field mustard	cytosol	28.45	37.38
VIT_05s0077g01740.t01	Wine grape	nucleus	8.37	37.29
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	10.94	23.91

Protein Annotations

EntrezGene:100250814	wikigene:100250814	EntrezGene:100262858	wikigene:100262858	Gene3D:2.160.20.10	MapMan:50.3.2
ProteinID:CCB47837	ProteinID:CCB47837.1	UniProt:F6H6C6	EMBL:FN595243	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	EntrezGene:LOC100250814	wikigene:LOC100250814	EntrezGene:LOC100262858	wikigene:LOC100262858	PFAM:PF00295
PANTHER:PTHR31339	PANTHER:PTHR31339:SF17	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	TIGR:TC70088	TMHMM:TMhelix	UniParc:UPI000210A999	ArrayExpress:VIT_16s0050g01110
EnsemblPlantsGene:VIT_16s0050g01110	EnsemblPlants:VIT_16s0050g01110.t01	unigene:Vvi.21317	RefSeq:XP_002273177	RefSeq:XP_002273177.2	RefSeq:XP_002273669
RefSeq:XP_002273669.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr16:+:18026669..18039457

Molecular Weight (calculated)

115010.0 Da

IEP (calculated)

5.970

GRAVY (calculated)

-0.187

Length

1051 amino acids

Sequence
(BLAST)

0001: MEFCLNSRKP HALGIVLAVL ILGLLSFRVA ECQTSSFMEP IKYKALRCRK HSAVLTDFGA TGDGKTINTK AFKSAIDHLS QFADDGGAEL IVPPGKWLTG
0101: SFNLTSHFTL YIDKDAVILG AQDESAYPLI EVLPSYGVGR DGGGRHSSLI FGTNLTDVVI TGGNGTLNGQ GKYWWDKFRA KKYNDTRPYL IEIMYSNHVQ
0201: ISNLTLIDSP SWNVHPVYSR NVLVKDLTIL APIDSPNTDG INPDSCKKVR IEDCFIVSGD DCIAVKSGWD QYGYKFGMPT KDLLIRRLTC ISPDSATIAL
0301: GSEMSGGIKN VWAEDITAID TQSGIRIKTG IGRGGYVKDI YVRRMTVKTM KYVFWITGDY GSHPDDGWDP KALPVIKNIN YRDMVAENVT YSARLDGISG
0401: DPFTGICISN VTIGLTEKPK ELQWNCTNVA GVTSQVTPRS CDLLPPSDKE ESDYPHIPPL PSYGKGRDGG GRFSSLIFGT NLTDVVIIGG NGTINGQGRV
0501: WWDKFKQKKL VDTRPYLIEI MFSDQVQISN LTLIDSPSWN VHPVYCSDVI IQGMTILAPV DVPNTDGINP DSCANVKIED CYIVSGDDCI AVKSGWDQYG
0601: IKYGAWEGEA IGRGEWGGSE EYRAINCRKH SAVLTDFGAK GDGKTMNTKA FKSAIANLSQ VAGDGGAQLI VPPGKWLTGS FNLTSHFTLF VHKDAVILGA
0701: QDEAAYPLIE ILPSYGAGRD GGGRHASLIF GTNLTDVVIT GGNGTIHGQG QYWWDKFRAD KLKDTRPYLI EIMYSDQVQI SNLILIDSPS WNVHPTYSSN
0801: VIIQWLTIIA PVGSPNTDGI NPDSSKNVLI EDCFIVSGDD CIAVKSGWDQ YGIKFGMPTE DLIIRRLTCI SPDSAVIALG SEMSGGIKNV RAENITAIDS
0901: ESGVRIKSGV GRGGYVKDIY ARGMTMKTMK YVFWMTGDYG QHPDDGWDPK ALPKIENINY RDMVAENVTY SARLDGISGD PFTGICISNV KIGLTEKPKK
1001: LQWNCTNVEG VSSQVTPPSC DLLHPSKKVF NCPFPEDKLP IEDVQMKICS T

Best Arabidopsis Sequence Match ( AT3G48950.1 )
(BLAST)

001: MIRPTFGLLV FLAIFLFPAI ESRSHRNSVT SKIEFSALNC RKHSAILTDF GAVGDGKTSN TKAFRNAISK LSQMATDGGA QLVVPPGKWL TGSFNLTSHF
101: TLFIQRGATI LASQDESEWP VIAPLPSYGK GRDGTGTGRF NSLISGTNLT DVVITGNNGT INGQGQYWWD KFKKKQFKIT RPYLIEILFS KNIQISNITL
201: IDSPSWNIHP VYCNSVIVKS VTVLAPVTVP NTDGINPDSC TNTLIEDCYI VSGDDCIAVK SGWDQYGIKF GMPTQQLSIR RLTCISPKSA GVALGSEMSG
301: GIKDVRIEDV TLTNTESAIR IKTAVGRGAY VKDIYARRIT MKTMKYVFWM SGNYGSHPDE GFDPKALPEI TNINYRDMTA ENVTMSASLD GIDKDPFTGI
401: CISNVTIALA AKAKKMQWNC TDVAGVTSRV TPEPCSLLPE KKAQAKNVDC AFPSDLIPIE SVVLKKCFL

Arabidopsis Description

Endo-polygalacturonase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.