Factsheet for Bra018023.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08095	Canola	extracellular, plasma membrane	98.93	93.74
AT3G48950.1	Thale cress	extracellular	86.35	86.35
Bra018004.1-P	Field mustard	cytosol	69.08	74.14
KRG91587	Soybean	cytosol, extracellular, plastid	35.18	67.62
KRH35239	Soybean	extracellular, plasma membrane, plastid	67.38	65.83
KRH35240	Soybean	extracellular	65.67	65.39
KRH35238	Soybean	extracellular	62.69	63.09
KRH38380	Soybean	extracellular	63.97	63.03
KRH08861	Soybean	extracellular	63.97	62.89
Bra007609.1-P	Field mustard	extracellular	60.98	60.85
Bra019299.1-P	Field mustard	extracellular, plasma membrane	63.75	60.65
Bra013697.1-P	Field mustard	extracellular, plasma membrane	62.69	59.63
Solyc03g007950.2.1	Tomato	extracellular	57.57	57.82
PGSC0003DMT400024595	Potato	cytosol	56.93	55.97
VIT_16s0050g01120.t01	Wine grape	cytosol	21.11	52.94
Bra013734.1-P	Field mustard	extracellular, vacuole	42.64	45.05
Bra019264.1-P	Field mustard	extracellular, vacuole	42.43	44.12
Bra003485.1-P	Field mustard	extracellular, golgi	42.0	43.01
Bra037005.1-P	Field mustard	extracellular	43.71	42.98
Bra011440.1-P	Field mustard	extracellular	43.28	42.83
Bra022182.1-P	Field mustard	extracellular, golgi	40.94	42.38
Bra001642.1-P	Field mustard	vacuole	40.72	42.35
Bra007662.1-P	Field mustard	extracellular, plasma membrane	41.36	42.17
Bra032138.1-P	Field mustard	cytosol	71.22	41.75
Bra028511.1-P	Field mustard	extracellular	39.02	40.94
Bra037429.1-P	Field mustard	extracellular	38.38	40.54
Bra020656.1-P	Field mustard	extracellular, plasma membrane	38.81	38.72
Bra016521.1-P	Field mustard	extracellular, golgi, plastid	41.36	38.26
Bra001215.1-P	Field mustard	extracellular	36.46	38.08
Bra039462.1-P	Field mustard	extracellular, mitochondrion, plastid	39.66	37.05
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	66.31	29.59
Bra035299.1-P	Field mustard	extracellular, plasma membrane, vacuole	22.81	22.38
Bra007626.1-P	Field mustard	mitochondrion	21.75	17.56

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra018023	EnsemblPlants:Bra018023.1	EnsemblPlants:Bra018023.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4DND6	PFAM:PF00295	PANTHER:PTHR31339	PANTHER:PTHR31339:SF17
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI000253F23C	SEG:seg	:	:	:	:

Description

AT3G48950 (E=5e-236) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA06:-:9560313..9562345

Molecular Weight (calculated)

51368.7 Da

IEP (calculated)

8.039

GRAVY (calculated)

-0.133

Length

469 amino acids

Sequence
(BLAST)

001: MIRLVFGILV LFAIFRFPTI ESRSHHPSAY SGIEFPALNC RKHKAVITDF GGVGDGKTSN TKAFRTALSK LSDLASDGGA QLLVPPGKWL TGSFNLTSHF
101: TLFIQKGATI LASQDESEWP VVPPLPSYGK GRDGTGTGRF NSLISGTNLT DVVITGNNGT INGQGQYWWD KFKKKQFNLT RPYMIELLFS QNIQISNITL
201: VDSPSWHIHP VYCNNVIVKS ITIIAPVDVP NTDGINPDSC TNTLIEDCYI VSGDDCIAVK SGWDQYGIKF GMPTQQLSIR RLTCISPKSA GVALGSEMSG
301: GIKDVRIEDV TLINTESSVR IKTAAGRGAY VKDIYARRFT MKTMKYVFWM SGNYNQHPDE GYDPKALPEV SNINFSDMTA ENVTMSASLA GIDKDPFTGI
401: CISNVNITLS AKPKEVQWNC TDVAGVTSRV KPEPCSLLPE KKTEGKNMDC MFPSDLIPIE SVVLKKCSL

Best Arabidopsis Sequence Match ( AT3G48950.1 )
(BLAST)

001: MIRPTFGLLV FLAIFLFPAI ESRSHRNSVT SKIEFSALNC RKHSAILTDF GAVGDGKTSN TKAFRNAISK LSQMATDGGA QLVVPPGKWL TGSFNLTSHF
101: TLFIQRGATI LASQDESEWP VIAPLPSYGK GRDGTGTGRF NSLISGTNLT DVVITGNNGT INGQGQYWWD KFKKKQFKIT RPYLIEILFS KNIQISNITL
201: IDSPSWNIHP VYCNSVIVKS VTVLAPVTVP NTDGINPDSC TNTLIEDCYI VSGDDCIAVK SGWDQYGIKF GMPTQQLSIR RLTCISPKSA GVALGSEMSG
301: GIKDVRIEDV TLTNTESAIR IKTAVGRGAY VKDIYARRIT MKTMKYVFWM SGNYGSHPDE GFDPKALPEI TNINYRDMTA ENVTMSASLD GIDKDPFTGI
401: CISNVTIALA AKAKKMQWNC TDVAGVTSRV TPEPCSLLPE KKAQAKNVDC AFPSDLIPIE SVVLKKCFL

Arabidopsis Description

Endo-polygalacturonase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.