Factsheet for VIT_16s0050g01120.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2630g00010.t01	Wine grape	cytosol	9.63	27.27
KRG91587	Soybean	cytosol, extracellular, plastid	34.76	26.64
Bra018004.1-P	Field mustard	cytosol	52.94	22.65
CDY05907	Canola	cytosol	52.94	22.6
KRH35239	Soybean	extracellular, plasma membrane, plastid	57.75	22.5
KRH35238	Soybean	extracellular	55.62	22.32
KRH35240	Soybean	extracellular	56.15	22.29
VIT_02s0025g00260.t01	Wine grape	extracellular	56.68	22.08
AT3G48950.1	Thale cress	extracellular	55.08	21.96
KRH38380	Soybean	extracellular	55.08	21.64
CDY08113	Canola	extracellular	52.41	21.49
VIT_15s0046g02000.t01	Wine grape	extracellular, vacuole	54.55	21.29
AT2G23900.1	Thale cress	extracellular	54.01	21.17
Bra018023.1-P	Field mustard	extracellular	52.94	21.11
KRH08861	Soybean	extracellular	53.48	20.96
CDY20264	Canola	extracellular	52.94	20.71
CDY39678	Canola	extracellular	52.94	20.71
CDY05885	Canola	extracellular	50.27	20.26
CDY08095	Canola	extracellular, plasma membrane	52.94	20.0
Solyc03g007950.2.1	Tomato	extracellular	47.06	18.84
PGSC0003DMT400024595	Potato	cytosol	44.92	17.61
VIT_07s0005g00890.t01	Wine grape	extracellular	37.43	14.68
VIT_05s0077g01760.t01	Wine grape	extracellular, vacuole	34.22	14.07
VIT_05s0077g01740.t01	Wine grape	nucleus	17.65	13.98
VIT_07s0005g02590.t01	Wine grape	extracellular, vacuole	34.76	13.95
VIT_02s0025g01330.t01	Wine grape	extracellular	31.55	13.2
Bra032138.1-P	Field mustard	cytosol	52.94	12.38
VIT_04s0044g01420.t01	Wine grape	extracellular, golgi, vacuole	33.69	12.19
VIT_11s0016g00720.t01	Wine grape	extracellular, peroxisome, plastid	30.48	11.56
VIT_16s0050g01110.t01	Wine grape	extracellular, golgi	62.03	11.04
VIT_08s0007g07880.t01	Wine grape	extracellular, plasma membrane	22.46	8.73
VIT_13s0139g00110.t01	Wine grape	cytosol	4.28	8.33

Protein Annotations

ArrayExpress:VIT_16s0050g01120	EMBL:FN595243	EnsemblPlants:VIT_16s0050g01120.t01	EnsemblPlantsGene:VIT_16s0050g01120	Gene3D:2.160.20.10	InterPro:IPR012334
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31339	PANTHER:PTHR31339:SF17	ProteinID:CCB47836	ProteinID:CCB47836.1
SEG:seg	SUPFAM:SSF51126	UniParc:UPI000210A998	UniProt:F6H6C5	MapMan:35.1	:

Description

No Description!

Coordinates

chr16:+:18039790..18041713

Molecular Weight (calculated)

19988.6 Da

IEP (calculated)

4.514

GRAVY (calculated)

-0.221

Length

187 amino acids

Sequence
(BLAST)

001: MASVEYPAIN CRNHSAVDES DYPIVKALPS YGGTAGRFSS LILGTNLTDV VITGGNGTTN GQGDYGPPPA PGHEGPVIEG INYRDMVADN VTYPAQLHGI
101: SGGPFTGFCI SNVTIGLTEE SRKQQWDCDE VQGITSRVTP QPCDLLSPSK EILNCPFPKD LLPIEDVKLR ICSYCETTSG MVARTIH

Best Arabidopsis Sequence Match ( AT3G48950.1 )
(BLAST)

001: MIRPTFGLLV FLAIFLFPAI ESRSHRNSVT SKIEFSALNC RKHSAILTDF GAVGDGKTSN TKAFRNAISK LSQMATDGGA QLVVPPGKWL TGSFNLTSHF
101: TLFIQRGATI LASQDESEWP VIAPLPSYGK GRDGTGTGRF NSLISGTNLT DVVITGNNGT INGQGQYWWD KFKKKQFKIT RPYLIEILFS KNIQISNITL
201: IDSPSWNIHP VYCNSVIVKS VTVLAPVTVP NTDGINPDSC TNTLIEDCYI VSGDDCIAVK SGWDQYGIKF GMPTQQLSIR RLTCISPKSA GVALGSEMSG
301: GIKDVRIEDV TLTNTESAIR IKTAVGRGAY VKDIYARRIT MKTMKYVFWM SGNYGSHPDE GFDPKALPEI TNINYRDMTA ENVTMSASLD GIDKDPFTGI
401: CISNVTIALA AKAKKMQWNC TDVAGVTSRV TPEPCSLLPE KKAQAKNVDC AFPSDLIPIE SVVLKKCFL

Arabidopsis Description

Endo-polygalacturonase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SMT3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.